Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318D02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.97 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   5.2  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   9.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.0  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 159 LVCLSAHIAARKLMATSLKYCYESV 85
           +V  S  I A KLMATSLK C +S+
Sbjct: 494 MVSQSPPIPASKLMATSLKKCVQSL 518


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 329 NSRPKLAKSVQPFSSFSETNKQQFIF 252
           N+ P+L +S++P+ S  + + Q+FIF
Sbjct: 917 NAFPQLVRSLKPYISVLKQDHQEFIF 942


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 180 QLWMA-NQLVCLSAHIAARKLMATSLKYCYESVTKS 76
           Q W   N+L+C  A+ A RKL+  + K  Y S  KS
Sbjct: 820 QSWFTGNKLLCAVAYDAGRKLLFGTYKGLYISSRKS 855


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 332 NNSRPKLAKSVQPFSSFSETNKQ 264
           NN++P +AKS    ++ SETNK+
Sbjct: 682 NNTKPIVAKSPVTVTASSETNKK 704


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 407 QNCYFYLIPSIFMFSYILNLLWTSTNN 327
           +  YF  IPS+F  S   +++ +S NN
Sbjct: 407 ERSYFNFIPSLFSKSVFSHMITSSLNN 433


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 296 AGPIWLILVLNYLWKSRE 349
           +GPIW +   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 154 DELIGHPKLSITEVHII*NRQSL 222
           D ++GH K S+TE H I    SL
Sbjct: 439 DSVLGHSKPSLTEFHAILGLYSL 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,430
Number of Sequences: 5004
Number of extensions: 39874
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)