Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1140 - 9483689-9484258                                           28   5.2  
04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960     28   5.2  
02_01_0422 - 3084940-3087072                                           28   5.2  
06_03_1328 + 29361248-29361502,29361903-29362453,29362585-293626...    27   6.9  
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    27   9.1  

>06_01_1140 - 9483689-9484258
          Length = 189

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 241 SIHIKMNCCL-LVSLKLENGWTD 306
           S H K++C L L+ LK  NGW+D
Sbjct: 110 SKHSKLSCMLELMKLKASNGWSD 132


>04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960
          Length = 491

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 241 SIHIKMNCCL-LVSLKLENGWTD 306
           S H K++C L L+ LK  NGW+D
Sbjct: 160 SKHSKLSCVLELMKLKASNGWSD 182


>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 481 PKLLYKINLKQTKGISPTGTRERKNKIVIFI*FRAF 374
           P LL++ N+ +    SP  T+E  NK++  I F  F
Sbjct: 656 PILLHRCNVAEVDLSSPNSTKEYINKVIFVIAFCVF 691


>06_03_1328 +
           29361248-29361502,29361903-29362453,29362585-29362671,
           29362910-29362966,29363069-29363307,29364190-29364308,
           29364397-29364483,29365511-29365567
          Length = 483

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/64 (20%), Positives = 30/64 (46%)
 Frame = -3

Query: 192 FSNTQLWMANQLVCLSAHIAARKLMATSLKYCYESVTKSECIGSRHSFYFNKTYFYLYIE 13
           F  TQ  +   +VC  A +    L+   + +C++   +   +    S++FN     +Y++
Sbjct: 173 FLQTQNIVHPLVVCSGATLVIHILLCWVMVHCFDLGNRGAALSISLSYWFNVILLAIYVK 232

Query: 12  INFV 1
           ++ V
Sbjct: 233 VSEV 236


>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 173 GWPINSSACQLISQQGN*WQRVLN 102
           GWP      Q +S+ GN W+++ N
Sbjct: 561 GWPPKGRLSQRMSEHGNMWRKIWN 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,622
Number of Sequences: 37544
Number of extensions: 207393
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)