Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318D02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.27 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 392 YLIPSIFMFSYILNLLWTSTNNSRPKLAKSV 300
           Y+IP++ M    L +LW  + ++   +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 60  RHSFYFNKTYFYLYIEIN 7
           +H   + + YFYL++E++
Sbjct: 529 KHDMVYLQKYFYLFMEMD 546


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 60  RHSFYFNKTYFYLYIEIN 7
           +H   + + YFYL++E++
Sbjct: 529 KHDMVYLQKYFYLFMEMD 546


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 244 IHIKMNCCLLVSLKLENGWTD 306
           I I + CC+LV +   + W D
Sbjct: 246 IQIYIPCCMLVIVSWVSFWLD 266


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 244 IHIKMNCCLLVSLKLENGWTD 306
           I I + CC+LV +   + W D
Sbjct: 246 IQIYIPCCMLVIVSWVSFWLD 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,584
Number of Sequences: 438
Number of extensions: 2737
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)