Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   5.2  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.0  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.0  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.0  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 186 PPSNWQSYCDT 218
           PP+NW+SY DT
Sbjct: 149 PPNNWRSYFDT 159


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 174 SCSRPPSNWQSYCDTHPP 227
           S S+  SN    CD+HPP
Sbjct: 546 SASKSSSNISEMCDSHPP 563


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 111 PQIERLFQFIRDLTASAAPTSQNI 40
           P +++  + I DLT S APT  N+
Sbjct: 335 PMVQKTLRNISDLTDSQAPTILNV 358


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 104 ICGENRVWEAGVWQN--LITKGIDDVMQPAAFKLAI 205
           +CG   V    +W+   L T+GI+D + P A  LA+
Sbjct: 460 LCGSLIVASPVIWKKIKLTTEGIEDEIPPLANGLAV 495


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 246 INLAQSSVGVCRSTIASLKAAGCMTSSMPFVIK 148
           ++L +S V +CRST   +  +      +PFV++
Sbjct: 361 LHLLKSLVNICRSTRLYIPLSSQFLEMIPFVLR 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,739
Number of Sequences: 5004
Number of extensions: 28502
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)