Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318D01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0705 - 27406405-27406424,27406425-27409260 35 0.034
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 28 5.2
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103... 28 5.2
11_03_0185 - 11329594-11329890,11330873-11331598 27 6.9
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554... 27 6.9
11_01_0548 + 4322875-4323213 27 9.1
07_01_0970 - 8159633-8159848,8159884-8159977,8161377-8161594 27 9.1
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094... 27 9.1
05_05_0123 - 22553400-22554509 27 9.1
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 27 9.1
>04_04_0705 - 27406405-27406424,27406425-27409260
Length = 951
Score = 35.1 bits (77), Expect = 0.034
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +2
Query: 65 EAVRSRINWNKRSICGENRVWEAGVWQNLITKGIDDVMQPAAFKLAIVLRHTPTEDCAKL 244
EA+R + KR + + VW+A W + +DD K I++ T ++D A L
Sbjct: 263 EALRGHLA-KKRYLLLLDDVWDAHAWYEIRHAFVDD-----GTKSRIIIT-TRSQDIASL 315
Query: 245 MSE--LLKTHPVSVQEELTSYCVSLLTDDEARRC 340
S +++ P+S QE + +C + +D R C
Sbjct: 316 ASSNRIIRLEPLSEQEAWSLFCNTTFREDADREC 349
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 110 GENRVWEAGVWQNLITKGIDDVMQPAAFKLAIV 208
G N+VW +G W + G+ D + F + V
Sbjct: 207 GPNKVWRSGPWDGMQFTGVPDTITYKNFSFSFV 239
>04_01_0100 +
1034057-1034308,1034962-1035078,1035152-1035382,
1038200-1038455,1038551-1038807,1038978-1039250,
1039617-1039898,1040045-1040165,1040351-1040520,
1040613-1040711
Length = 685
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 35 SCIFCDVGAAEAVRSRINWNKRSICGEN 118
+C + VG + + R+NW S CG +
Sbjct: 612 TCRYIPVGLLDVIPQRLNWRPPSYCGRD 639
>11_03_0185 - 11329594-11329890,11330873-11331598
Length = 340
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 146 NLITKGIDDVMQPA-AFKLAIVLRHTPTEDCAKLMSELLKTHP 271
N + + + PA A L +VL H EDC K++++ K P
Sbjct: 223 NYVAGDMFRAIPPAQAVMLKLVLHHWSDEDCVKILTQCKKAIP 265
>03_02_0085 -
5539188-5539388,5539576-5539714,5540108-5540279,
5541119-5541165,5541450-5541527,5542113-5542177,
5543108-5543155,5543393-5543473,5543586-5543783
Length = 342
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 197 LAIVLRHTPTEDCAKLMSELLKTHPV 274
+AI+ R P ++CA+ E+LK +PV
Sbjct: 110 MAIISRLYPCKECAEHFKEVLKANPV 135
>11_01_0548 + 4322875-4323213
Length = 112
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 291 SSSCTDTGCVFRSSDINL 238
+SSC DTGC R D+ L
Sbjct: 57 ASSCYDTGCAIRCRDLGL 74
>07_01_0970 - 8159633-8159848,8159884-8159977,8161377-8161594
Length = 175
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 58 RGGSGQVSYKLEQALNLWGESSMGGGGLAE 147
RGG G + +++L +W + GGGG A+
Sbjct: 44 RGGGGASEEEEKRSLRVWSDVFAGGGGGAK 73
>06_02_0068 +
11107493-11107653,11109116-11109218,11109311-11109423,
11109502-11109624,11110165-11110266,11110367-11110532,
11111215-11111331,11111438-11111478,11111735-11111836,
11111924-11112140,11112271-11112498,11112580-11112707,
11112804-11112921,11113020-11113235,11113314-11113463,
11113553-11113629,11113973-11114190,11114443-11114656,
11114744-11114823,11114898-11115015,11115092-11115262,
11116124-11116292,11116404-11116447,11116620-11116662,
11116743-11116888,11118337-11118431,11118579-11119477,
11120540-11120638,11120907-11121002,11123447-11123568,
11123675-11123767,11123922-11124114
Length = 1653
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 215 HTPTEDCAKLMSELLKTHPVSVQEELTSYC 304
H P++D +ELL+ H S E+L S C
Sbjct: 756 HDPSQDELSFANELLEFHFQSALEDLVSIC 785
>05_05_0123 - 22553400-22554509
Length = 369
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 112 GESSMGGGGLAELDHKGHR 168
G S+GGG E DH GHR
Sbjct: 239 GRGSVGGGKHKERDHGGHR 257
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 83 INWNKRSICGENRVWEAGVWQNLITK 160
I W+K S G R++E WQ TK
Sbjct: 745 IYWSKMSTAGLQRIYECYTWQIYATK 770
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,859
Number of Sequences: 37544
Number of extensions: 243104
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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