Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318D01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.82 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.3  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 446 DAHAKLVRAEYSKLTQDNYVELRI 517
           D HAKLV+A + + T D  +++ +
Sbjct: 553 DTHAKLVQAAFEQNTTDQSMDIDV 576


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 160 GHR*RHAAGRLQTGN 204
           GHR RH+   L TGN
Sbjct: 192 GHRQRHSTIHLSTGN 206


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 150 KFCQTPASHTRFSPQIERLFQFIRDLTASAA 58
           KFC T    T+ +   E   QF+ D   + A
Sbjct: 452 KFCSTEKRLTKQNTAFENQLQFVSDAVMAFA 482



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 233 CAKLMSELLKTHPVSVQEELTSYCVSLLTDDEARRCACWQS 355
           C  +  +L+K   V+      +  + LLT   AR C  + S
Sbjct: 310 CIAIKEKLVKDSGVAKDAAYDNIVLKLLTKPRARGCIIFGS 350


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 14  PPNRTVSSCIFCD 52
           PPNRT++S ++ +
Sbjct: 85  PPNRTINSVVYIE 97


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 116 SPHKLSACSSLYET*PLPPRRRHKI 42
           SP  L     + ET  LPPR+R K+
Sbjct: 448 SPDPLDLAIPVRETLILPPRKRCKM 472


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 14  PPNRTVSSCIFCD 52
           PPNRT++S ++ +
Sbjct: 206 PPNRTINSVVYIE 218


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +2

Query: 269 PVSVQEELTSYCVSLLTDDEARRCACWQSGPSGP 370
           P ++ E  +SY  S+          C  S P GP
Sbjct: 369 PPTLSESYSSYVNSMYASGAQFATPCTPSPPRGP 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,476
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)