Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.42 
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    25   6.8  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 208 MPSESGSAWSPPASTSERRLSNSSDGSACSGYSKTTTDSADFLATRPHTAAVIPG 372
           + S S S + P +++ +R  SNS + SA      TT D    L  RP  ++  PG
Sbjct: 137 LSSPSSSLYLPGSASYQR--SNSKNSSASILQMNTTLDDIPILLRRPGLSSYTPG 189


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 301 YSKTTTDSADFLATRPHTAAVIPG 372
           ++   T SA  +A + HT++V+PG
Sbjct: 57  HNSDATSSAQKVANKTHTSSVLPG 80


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 227 DPLSDGILTHIIPQHITISSSAR 159
           +PL DGIL+ ++P+   I S+++
Sbjct: 421 EPLLDGILSQLVPKSSGIDSNSQ 443


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 PSESGSAWSPPASTSERRLSNSSDGSACSGYSKTTTDSADFLATR 345
           P    +A SPPASTS      S DG  C   S T+T ++  L +R
Sbjct: 80  PGNITAAVSPPASTS------SKDGVVC---SPTSTGASQLLKSR 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,282
Number of Sequences: 5004
Number of extensions: 30945
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)