Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318C12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0513 + 14919136-14920881 34 0.080
08_02_0955 + 22994266-22995630 30 1.3
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692 29 1.7
10_08_0552 - 18714062-18714191,18714288-18714565,18714921-187149... 29 3.0
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 29 3.0
06_03_0383 - 20154045-20154712,20154969-20155122,20155780-201558... 28 4.0
07_01_0469 - 3552409-3553368 28 5.2
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 27 6.9
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858... 27 6.9
03_06_0436 - 33910321-33910851 27 6.9
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 27 6.9
10_01_0316 + 3479574-3482679,3482766-3483127 27 9.1
03_05_0495 - 24907659-24908747 27 9.1
01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251 27 9.1
>05_03_0513 + 14919136-14920881
Length = 581
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 214 SESGSAWSPPASTSERRLSNSSDGSACSGYSKTTTDSADFLATRPHTAAVIPGKPAANPL 393
S +GS+ +S+S S+ S S CS + D D ++RP + +P + AA PL
Sbjct: 305 SSTGSSSGSSSSSSSSGGSSGSSCSGCSSSGSDSNDDGDSASSRPDNSE-LPTEAAAKPL 363
Query: 394 Q 396
+
Sbjct: 364 E 364
>08_02_0955 + 22994266-22995630
Length = 454
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 304 SKTTTDSADFLATRPHTAAVIPGKPAANPLQFIRVGPADLGS 429
S++ + S T PH AAV+ PA+ + F+ +D G+
Sbjct: 37 SRSASPSRSRSKTPPHNAAVLSSTPASAAVDFVAASDSDAGA 78
>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
Length = 540
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 217 ESGSAWSPPASTSERRLSNSSDGSACSG--YSKTTTDSADFLATRPHTAAVIPGKPAANP 390
+ G + PP + S +S SG YS T + ++ AT AV+P PA+ P
Sbjct: 414 QHGLSSCPPQPSKPNHCSVASYAVQGSGQSYSATFKNPSNCAAT---VVAVLPQHPASGP 470
Query: 391 LQFIRVGP 414
+ F +GP
Sbjct: 471 MAFHHLGP 478
>10_08_0552 -
18714062-18714191,18714288-18714565,18714921-18714968,
18715222-18715308,18715522-18715634,18717140-18717349,
18717368-18717434
Length = 310
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 328 PHCLW*FSNNRYKRCHLRSCSISS 257
P CLW N+ K HLRSC + S
Sbjct: 169 PFCLWGELNDTEKWTHLRSCLVKS 192
>05_06_0005 +
24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 211 PSESGSAWSPPASTSERRLSNSSDGSACSGYSKTTTDS 324
P+ GS+W PA+ E S++ G AC KT +D+
Sbjct: 791 PNIGGSSWDRPATDKESEKSDNW-GEACKETEKTGSDT 827
>06_03_0383 -
20154045-20154712,20154969-20155122,20155780-20155896,
20157395-20157466
Length = 336
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 248 EAGGDHADPLSDGILTHIIPQHITISSSARNTALALH*HYRLSNAMHKN 102
E GGD P S G+ ++P H+ S A + H+R S ++
Sbjct: 192 EGGGDQ-QPWSPGVPDPVVPNHLETGSGAHHLEAITGDHHRSSGTKKRS 239
>07_01_0469 - 3552409-3553368
Length = 319
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 202 VKMPSESGSAWSPPASTSERRLSNSSDGSACSGYSKT 312
V++PS W P + R LS+SS + G +T
Sbjct: 252 VRVPSSGNGGWLPATPSGSRDLSSSSSSGSEPGSGET 288
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 223 GSAWSPPASTSERRLSNSS--DGSACSGYSKTTTDSAD 330
GS +S P++ N+S DG SGY+K++TD+++
Sbjct: 848 GSGYSKPSTGDYDSGKNASNTDGYGGSGYNKSSTDNSE 885
>03_06_0474 -
34184002-34184660,34184755-34184887,34185071-34185886,
34186013-34186104,34186710-34186863
Length = 617
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 229 AWSPPASTSERRLSNSSDGSACSGYSKTTTDSAD 330
+WS S SE+ + SS GS ++ +TD++D
Sbjct: 298 SWSSTDSESEKAVCFSSSGSIADLHASVSTDTSD 331
>03_06_0436 - 33910321-33910851
Length = 176
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 272 TPQMAALVAVIRKLPQTVRTSWRQGRTRLPSSRASPP 382
TP A A +L T TSWR+ R SS SPP
Sbjct: 132 TPHGACSPATRPRLATTAATSWRESRAAATSS--SPP 166
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 160 RADELIVMCCGIM*VKMPSESGSAWSPPASTSE 258
R EL+ CG++ M + G +WS +S+S+
Sbjct: 787 RPGELLEEACGVLEAAMSAAPGRSWSSVSSSSD 819
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 251 PARGD*ATPQMAALVAVIRKLP----QTVRTSWRQGRTRLPSSRASPPPTRYSLSG 406
P+ +T A L++ + LP + + SWRQ R+ S A+ PP + G
Sbjct: 29 PSNTSASTSAAAVLLSFLDSLPPASQRLLLPSWRQSRSSSSSGNATAPPPHCAFLG 84
>03_05_0495 - 24907659-24908747
Length = 362
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 265 LSNSSDGSACSGYSKTTTDSADFLATRPHTAAVIPGKPAANPLQFIR 405
L + D C+GY+ T + D + PHT PG+ +A+ ++ +R
Sbjct: 285 LLDMQDPEGCTGYTLTRVNWTDQVEGHPHTYR--PGEVSASLIKELR 329
>01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251
Length = 158
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +2
Query: 272 TPQMAALVAVIRKLPQTVRTSWRQGRTRLPSSRASPPPTRYSLSG--SARLTWAVG-LGS 442
TP L A Q+ W + PSS A PPP + SG A +T + G +G
Sbjct: 43 TPSSRKLEASASWANQSTPPRWLSSASAPPSSWAPPPPPELAKSGYCKAAVTRSEGRMGL 102
Query: 443 SC 448
C
Sbjct: 103 DC 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,871
Number of Sequences: 37544
Number of extensions: 256982
Number of successful extensions: 999
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -