Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318C09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 196 2e-51
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 69 6e-13
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 59 5e-10
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 46 3e-06
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 45 6e-06
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 37 0.002
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 1.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.2
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 3.9
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 26 3.9
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 25 5.2
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 25 6.8
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 6.8
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 9.0
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 9.0
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 196 bits (477), Expect = 2e-51
Identities = 93/142 (65%), Positives = 112/142 (78%)
Frame = +1
Query: 94 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 273
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 274 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 453
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 454 MMVEKVPDSTYEMVGGLDKQIK 519
MMVEK+PDSTYEMVGGL+KQIK
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIK 155
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 68.5 bits (160), Expect = 6e-13
Identities = 34/90 (37%), Positives = 55/90 (61%)
Frame = +1
Query: 250 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 429
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 430 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 519
+VDPLV M +E D ++ VGGL++QI+
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIR 142
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 58.8 bits (136), Expect = 5e-10
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +1
Query: 283 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 462
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 463 EKVPDSTYEMVGGLDKQIK 519
E+ PD TY VGG +QI+
Sbjct: 171 EEKPDVTYGDVGGCKEQIE 189
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/85 (29%), Positives = 45/85 (52%)
Frame = +1
Query: 259 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 438
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 439 PLVSLMMVEKVPDSTYEMVGGLDKQ 513
+S++ ++ PD +Y VGGLD Q
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQ 142
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 45.2 bits (102), Expect = 6e-06
Identities = 31/133 (23%), Positives = 64/133 (48%)
Frame = +1
Query: 121 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 300
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 301 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 480
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 481 TYEMVGGLDKQIK 519
+Y +GGL+ QI+
Sbjct: 189 SYADIGGLESQIQ 201
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +1
Query: 289 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 468
K ++K + L V+ ++ + + +SY + LP++ D V M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178
Query: 469 VPDSTYEMVGGLDKQIK 519
P Y +GGL KQI+
Sbjct: 179 KPTERYSDIGGLSKQIE 195
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -2
Query: 184 GPE----DDEDFEIFRRQ*AVTLQSWLCSTGGSPRPSPY 80
GPE D ED EIF Q +++ S L SP+P Y
Sbjct: 1000 GPENVDMDIEDNEIFTNQSTMSVPSMLVENEESPKPDEY 1038
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 365 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 267
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 127 EELQLIVAEKSQNLRRLQAQ 186
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 297 DLLFIHRFNHFSDVRSLFLQELQLLAQHTNFSVEFITLG 181
D IHR +H + + + L + HTN V+ + LG
Sbjct: 469 DTTNIHRDSHIGTINYMAPEALTDMNAHTNSGVKLVKLG 507
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 276 FNHFSD-VRSLFLQELQLLAQHTNFSVEFITL 184
F HF + +RS + L +HTN +VE+IT+
Sbjct: 317 FEHFKECIRST--KTYHLFLKHTNTNVEYITM 346
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 210 NFSVEFITLGLKTTKIL 160
NFSVEF L L TT IL
Sbjct: 379 NFSVEFTKLPLSTTPIL 395
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 417 NTTQQSRSSCVAHDGRESAGLYLRNGRWSRQTNQG 521
N+T + SS A+ +S+G ++ NG+ + + G
Sbjct: 233 NSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHG 267
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 279 RFNHFSDVRSLFLQELQLLAQHTNFSVEFITLG 181
R HF D+ F + NF+VEF+ G
Sbjct: 312 RRKHFDDINKSFFINTEAGTALRNFAVEFLEAG 344
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 407 LYTKYYPTKSILLCRS*W 460
+YT+YYPT + C S W
Sbjct: 552 VYTRYYPTFTAQPCLSGW 569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,331
Number of Sequences: 5004
Number of extensions: 37905
Number of successful extensions: 118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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