Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318C09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 210 3e-55
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 185 2e-47
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 185 2e-47
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 64 4e-11
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 62 2e-10
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 61 5e-10
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 61 5e-10
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 43 2e-04
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 39 0.002
Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical pr... 29 1.5
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z80220-4|CAB02307.2| 566|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical... 27 6.2
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 27 6.2
AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote defect... 27 8.1
AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote defec... 27 8.1
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 210 bits (514), Expect = 3e-55
Identities = 101/139 (72%), Positives = 115/139 (82%)
Frame = +1
Query: 103 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 282
R Y+ TK+++ Q VA+KSQN+RRLQAQRNELN KVRML+ GSYVGEV K M
Sbjct: 31 RKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKAM 90
Query: 283 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 462
DKKKVLVKVHPEGK+VVD+DK++DIN + RVALR +SY LHK+LPNKVDPLVSLMMV
Sbjct: 91 DKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMV 150
Query: 463 EKVPDSTYEMVGGLDKQIK 519
EKVPDSTYEMVGGLDKQIK
Sbjct: 151 EKVPDSTYEMVGGLDKQIK 169
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 185 bits (450), Expect = 2e-47
Identities = 88/139 (63%), Positives = 110/139 (79%)
Frame = +1
Query: 103 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 282
RPY+ TK+E+ + VAEKS N+RRL AQ+ ELN KVR+L+ GS+VGEV K M
Sbjct: 26 RPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAM 85
Query: 283 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 462
DKKKVLVK HP+GK++VD+ +VDI+ + A RVALR ++Y +H++LP+KVDPLVSLMMV
Sbjct: 86 DKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMV 145
Query: 463 EKVPDSTYEMVGGLDKQIK 519
EKVPDSTYEMVGGLD QIK
Sbjct: 146 EKVPDSTYEMVGGLDTQIK 164
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 185 bits (450), Expect = 2e-47
Identities = 88/139 (63%), Positives = 110/139 (79%)
Frame = +1
Query: 103 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 282
RPY+ TK+E+ + VAEKS N+RRL AQ+ ELN KVR+L+ GS+VGEV K M
Sbjct: 47 RPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAM 106
Query: 283 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 462
DKKKVLVK HP+GK++VD+ +VDI+ + A RVALR ++Y +H++LP+KVDPLVSLMMV
Sbjct: 107 DKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMV 166
Query: 463 EKVPDSTYEMVGGLDKQIK 519
EKVPDSTYEMVGGLD QIK
Sbjct: 167 EKVPDSTYEMVGGLDTQIK 185
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 64.5 bits (150), Expect = 4e-11
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +1
Query: 292 KVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 471
+ L+ V KFVVDL +V D+ RV + Y +H LP K+DP V++M VE+
Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEK 171
Query: 472 PDSTYEMVGGLDKQIK 519
PD TY VGG QI+
Sbjct: 172 PDVTYSDVGGCKDQIE 187
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 62.1 bits (144), Expect = 2e-10
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Frame = +1
Query: 121 KIEELQLIVAEKSQNLRRLQAQ---RNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKK 291
+I++ L+ E QN RL+ Q + E AKV LR VG + + +D +
Sbjct: 70 RIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMA-------VGSLEEIIDDQ 122
Query: 292 KVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 471
+V + + V++ VD + C V L ++++ + +L + DP+VS+M +EK
Sbjct: 123 HAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKA 182
Query: 472 PDSTYEMVGGLDKQIK 519
P TY VGGLD+QI+
Sbjct: 183 PQETYADVGGLDQQIQ 198
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 60.9 bits (141), Expect = 5e-10
Identities = 35/120 (29%), Positives = 63/120 (52%)
Frame = +1
Query: 160 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 339
Q L+ L+ + +E+ + G VGEV+K + ++K +VK ++VV
Sbjct: 33 QKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGC 92
Query: 340 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 519
++++ ++ RV+L + T+ + LP +VDPLV M E + +Y VGGL +QI+
Sbjct: 93 RRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIR 152
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 60.9 bits (141), Expect = 5e-10
Identities = 35/120 (29%), Positives = 63/120 (52%)
Frame = +1
Query: 160 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 339
Q L+ L+ + +E+ + G VGEV+K + ++K +VK ++VV
Sbjct: 41 QKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGC 100
Query: 340 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 519
++++ ++ RV+L + T+ + LP +VDPLV M E + +Y VGGL +QI+
Sbjct: 101 RRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIR 160
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/85 (25%), Positives = 42/85 (49%)
Frame = +1
Query: 259 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 438
+G+ ++ +D+ +V + V + +D + C VAL S L +LP + D
Sbjct: 85 IGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEAD 144
Query: 439 PLVSLMMVEKVPDSTYEMVGGLDKQ 513
+ ++ ++ PD +Y +GGLD Q
Sbjct: 145 SSIQMLRPDEKPDISYGDIGGLDMQ 169
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 289 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 468
K ++K + + + VD +++ V + +SY + + LP + D V M V++
Sbjct: 111 KCAVIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDE 170
Query: 469 VPDSTYEMVGGLDKQIK 519
P Y +GG DKQI+
Sbjct: 171 RPTEQYSDIGGCDKQIQ 187
>Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical
protein F36A2.9b protein.
Length = 565
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 262 GEVVKPMDKKKVLVKVHPEGKFVVDLDKN 348
G VV +D+K + + H EGKF+VD + N
Sbjct: 16 GSVVPNVDQKILRGEFHDEGKFMVDYEDN 44
>Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical
protein F36A2.9a protein.
Length = 528
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 262 GEVVKPMDKKKVLVKVHPEGKFVVDLDKN 348
G VV +D+K + + H EGKF+VD + N
Sbjct: 16 GSVVPNVDQKILRGEFHDEGKFMVDYEDN 44
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 418 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 519
+L +K+D VEK P T++ +GG + QI+
Sbjct: 160 VLDDKIDSNAMGHKVEKTPKETFDDIGGCESQIQ 193
>Z80220-4|CAB02307.2| 566|Caenorhabditis elegans Hypothetical
protein T08G11.4 protein.
Length = 566
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 358 NDVTANCRVALRNESYTLHK-ILPNKVDPLVSLMMVEKVPDSTYE 489
N++T C V HK IL N ++ M+EK P+ST+E
Sbjct: 155 NELTKQCEVMKPIYPIDQHKDILENPDYQQITKTMIEKNPESTFE 199
>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
protein F22B5.7 protein.
Length = 1415
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 328 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 507
V++ D N+++ + ANC + N T + V P++ EK P +V +D
Sbjct: 351 VLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDPLVACID 410
>AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical
protein F48G7.12 protein.
Length = 435
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -3
Query: 390 KSDTTIGRDIVNINVLV*IDDEFTFRMNFYEDLLFIHRFNHFSDVRSLFLQEL 232
K D + D+ N+L DE TF ++ D IH N D+ LFL L
Sbjct: 272 KRDVMVHGDLWAANILWKEKDEGTFSVSKVIDYQLIHMGNPAEDLVRLFLSTL 324
>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
Length = 1415
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 328 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 507
V++ D N+++ + ANC + N T + V P++ EK P +V +D
Sbjct: 351 VLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDPLVACID 410
>AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote
defective-1 protein.
Length = 706
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 355 INDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQI 516
I ++ CR + + + +IL +VD +V + V ++PD T G ++ I
Sbjct: 373 IVELDTRCRFEVAAQGNFVKRILIVEVDEMVQTVYVHRIPDRTVRGRNGEEELI 426
>AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote
defective: embryonic lethalprotein 1 protein.
Length = 706
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 355 INDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQI 516
I ++ CR + + + +IL +VD +V + V ++PD T G ++ I
Sbjct: 373 IVELDTRCRFEVAAQGNFVKRILIVEVDEMVQTVYVHRIPDRTVRGRNGEEELI 426
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,808
Number of Sequences: 27780
Number of extensions: 218455
Number of successful extensions: 703
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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