Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    26   3.0  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    26   3.9  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   5.2  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   9.0  

>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 407 PRPTVASRHQRYFLRVLILGDNVSQK 484
           P     S  ++YF R+ I+GD+++QK
Sbjct: 25  PAEKYVSFQKKYFNRLTIIGDSITQK 50


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 391 ISLLMPSTDSGQSPSTVFSPSSYFR-RQCKSETKFVHIYLGIV 516
           IS L  +   GQ   +VFS   YFR R  K+     H+YLG+V
Sbjct: 386 ISALSFAIKHGQDIGSVFSLQPYFRDRYFKN-----HVYLGVV 423


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 112 TLGVAGVKIFTDFHNSPNVEAKFK*LNYLVIRADIY 5
           ++GV  V  FT FHN+P +E   K +N  V + D Y
Sbjct: 20  SIGVCRVVRFTTFHNTP-IEVYNKKVNDGVWKRDPY 54


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 182 RPPEDRQAQRSLKIDVADFTPFKNN 256
           RPPE+R A++  +++   F  F+ N
Sbjct: 308 RPPEERYAEQLSQLNEMGFVDFERN 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,775
Number of Sequences: 5004
Number of extensions: 38398
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)