Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320     30   0.98 
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475           29   1.7  
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856     28   5.2  
10_05_0074 - 8865884-8866567,8866612-8866923                           27   6.9  
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321...    27   6.9  
11_02_0113 + 8453628-8453820,8453970-8454941,8455031-8455644           27   9.1  
09_04_0503 - 18170645-18170858,18171029-18171222,18171419-181716...    27   9.1  
01_06_1637 - 38805609-38805719,38805872-38806017,38806115-388062...    27   9.1  

>05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320
          Length = 627

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 315 HGNIRSGCIALDTSTRPRFSRLSYVHIIANALDRQWPVAINGIFSE 452
           H NI S CI LD    P+ S      ++ N +D      +NG F +
Sbjct: 440 HRNISSKCILLDEDYEPKISDFGLARLM-NPIDTHLSTFVNGEFGD 484


>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
          Length = 634

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 315 HGNIRSGCIALDTSTRPRFSRLSYVHIIANALDRQWPVAINGIFSE 452
           H NI S CI LD    P+ S      ++ N +D      +NG F +
Sbjct: 447 HRNISSKCILLDDDYDPKISDFGLARLM-NPIDTHLSTFVNGEFGD 491


>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
          Length = 1494

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 366 EVVYSYLMRYSRTGYYHVRSGLIV*QTNAYDGAMRSWLFLKGVKSATSIFRLLCA 202
           ++VY  L+R      Y V  G+       Y G M+  + +K  + AT +FR + A
Sbjct: 333 DLVYGLLVRRRVREGYRVFHGVKEKDIALYHGLMKGLIRIKRAREATEVFREMVA 387


>10_05_0074 - 8865884-8866567,8866612-8866923
          Length = 331

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 358 HDLVSLGLAMSISLLMPSTDSGQSPSTVFSPSS 456
           H +  LGLAM+ S L PST++ ++ ++  S ++
Sbjct: 120 HSITPLGLAMASSPLAPSTEAAKTTASSTSTAT 152


>03_01_0418 -
           3211687-3211933,3212016-3212164,3212443-3212551,
           3212650-3212840,3212967-3213102,3213216-3213716,
           3213819-3213923,3214008-3214095,3214195-3214266,
           3214692-3214762,3215726-3216008,3216388-3216463
          Length = 675

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 415 DSGQSPSTVFSPSSY 459
           ++G+SPSTV+SP SY
Sbjct: 366 NTGESPSTVYSPMSY 380


>11_02_0113 + 8453628-8453820,8453970-8454941,8455031-8455644
          Length = 592

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 404 CPRPTV-ASRHQRYFLRVLILGDNVSQKPS 490
           C +P   A+ H ++FL + IL D  +Q+PS
Sbjct: 46  CGKPNEDANAHLQHFLEICILPDGQNQRPS 75


>09_04_0503 -
           18170645-18170858,18171029-18171222,18171419-18171629,
           18172162-18172553,18172926-18173054,18173353-18173487,
           18173885-18174088,18174716-18174771,18174793-18174950,
           18175864-18176231
          Length = 686

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +2

Query: 224 DVADFTPFKNNQDLIAPSYALVCHT-MRPDLTW*YPVRL--YRIRYEYTTSFLSA*LC 388
           D+    P  NN D ++ +Y LV  + + PDLT  Y +R+  + I ++   + LS+ LC
Sbjct: 325 DLCSIVPGSNN-DFMSSTYRLVLSSPVLPDLTVDYNMRMRTFAILHQEEVTGLSSNLC 381


>01_06_1637 -
           38805609-38805719,38805872-38806017,38806115-38806220,
           38806347-38806424,38806682-38806735,38806997-38807075,
           38807136-38807260,38807441-38807530,38807635-38807714,
           38807837-38807963,38808076-38808158,38808309-38808438
          Length = 402

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 352 VSNAIQPDRILPCQVWSHCVTN 287
           + NA+ PD   P Q WS C T+
Sbjct: 283 IQNALAPDGSFPGQSWSSCKTD 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,051
Number of Sequences: 37544
Number of extensions: 249837
Number of successful extensions: 535
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)