Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U80836-11|AAB37899.1|  180|Caenorhabditis elegans Hypothetical p...    29   2.0  
AF098995-13|AAC67476.2|   95|Caenorhabditis elegans Hypothetical...    28   4.7  

>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -2

Query: 154 LFFFVKYRT-SLVWY----HKFSKIPFTFSSRRYRNVSFTEIIY*NWYLRHFW 11
           LFFF +    S  WY    H ++K+   F  ++YR   FTE+I  N Y +  W
Sbjct: 290 LFFFHQLSPGSAFWYPKGAHIYNKL-VDFIRKQYRRRGFTEVITPNMYNKKLW 341


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -2

Query: 154 LFFFVKYRT-SLVWY----HKFSKIPFTFSSRRYRNVSFTEIIY*NWYLRHFW 11
           LFFF +    S  WY    H ++K+   F  ++YR   FTE+I  N Y +  W
Sbjct: 331 LFFFHQLSPGSAFWYPKGAHIYNKL-VDFIRKQYRRRGFTEVITPNMYNKKLW 382


>U80836-11|AAB37899.1|  180|Caenorhabditis elegans Hypothetical
           protein B0432.3 protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
 Frame = +2

Query: 86  GKRNFRKFVIP--NKRGSVLHKKKQMTEDREFEIDKRGVRDIGYN--LNGRFXXXXXXXX 253
           G  N+ KF  P  N+    L  K Q    +E      GV+  G++    G F        
Sbjct: 37  GPMNYEKFKWPGQNREFPELSPKFQKLNPKELH-RYTGVQADGFHDEKTGEFVPVKEMRS 95

Query: 254 XXXXXNLKDFDLKPYVSYK 310
                NL  F L+PYVSY+
Sbjct: 96  ELVVPNLDGFKLRPYVSYR 114


>AF098995-13|AAC67476.2|   95|Caenorhabditis elegans Hypothetical
           protein F58E1.13 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +2

Query: 32  ILINNFCKRNISVTATREGKRNFRKFVIPNKRGSVLHKKKQMTEDREFEI 181
           +L+ N+   N  +  T +G + F KFV  N+    ++ K+ ++E  EF+I
Sbjct: 11  VLVINYITHNNELIYTPQGLK-FSKFVANNQNKVDIYIKETVSEKPEFDI 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,414,698
Number of Sequences: 27780
Number of extensions: 195649
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)