Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.7  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    27   2.2  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    27   2.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.2  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    27   2.2  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   3.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   3.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.2  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    25   9.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.0  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/57 (26%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
 Frame = +2

Query: 182  EKVIKEPLENEGLDD---LVTRIAEH-LQGSLNQIGLAIAKETAEKLLQDSTQNRKQ 340
            +K+ ++P E +G D+   L   + +  ++GSLN++ L    + ++++L+ + Q+RK+
Sbjct: 985  KKLTEKPAETKGEDEEALLPPEVVQRKVKGSLNKMTLEKFDKISDQILEIAMQSRKE 1041


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/76 (26%), Positives = 39/76 (51%)
 Frame = +2

Query: 131 AVSRKPAHLEVVSVEDIEKVIKEPLENEGLDDLVTRIAEHLQGSLNQIGLAIAKETAEKL 310
           ++SRK    E   +E++E+  K+       +D+    AE L   +  +   +  ET +KL
Sbjct: 45  SLSRKSEAAES-QLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEEL--ETNDKL 101

Query: 311 LQDSTQNRKQTHSSAQ 358
           L+++T+  +QT   A+
Sbjct: 102 LRETTEKMRQTDVKAE 117


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 224 DLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDSTQNRKQTHSSAQDKINILVNDIKLYEK 403
           D   + AE LQ SLN +         EKLL    Q R+ + +S   K+ I + D+ L+  
Sbjct: 8   DYSEKFAE-LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADL-LFRA 65

Query: 404 G 406
           G
Sbjct: 66  G 66


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 218 LDDLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDSTQNRKQTHSS 352
           ++DL TRI+E       +  L+I  E  EKLL+++  + K + +S
Sbjct: 321 IEDLSTRISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTS 365


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 224 DLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDSTQNRKQTHSSAQDKINILVNDIKLYEK 403
           D   + AE LQ SLN +         EKLL    Q R+ + +S   K+ I + D+ L+  
Sbjct: 8   DYSEKFAE-LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADL-LFRA 65

Query: 404 G 406
           G
Sbjct: 66  G 66


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 137 SRKPAHLEVVSVEDIEKVIKEPLENEGLDDLVT 235
           +R P  +   ++E  E V ++P  NEG ++LVT
Sbjct: 51  TRGPPDVAEYNLETAEGVYRDPTINEGEEELVT 83


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = +2

Query: 260  SLNQIGLAIAKETAEKLLQDSTQNRKQTHSSAQDKINILVNDIKLYEKGIKTFAAEQQAP 439
            S+N +  +IA    ++ L   T +   ++ S ++  N  V D+   EK        +   
Sbjct: 1150 SINNLRTSIANGDIKEPLDVVTDDNTNSNFSLEET-NASVTDMPESEK-------HENGI 1201

Query: 440  FIKYLLKSLGGDILSEFCKYAASQCNL 520
            F  YLLK +  DI+S+F    + Q  L
Sbjct: 1202 FQAYLLKEMPNDIVSQFEMLKSKQIEL 1228


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 158 EVVSVEDIEKVIKEPLENEGLDDLVTRIAEHLQGSLNQ---IGLAIAKETAEKLLQDSTQ 328
           + +  E +EKV  + +   G+     +I +H+Q SL     + L +  +   +L Q+ST+
Sbjct: 729 QAMFAEFVEKVKPDVIGVSGMSVSAHKIRQHVQDSLTSHEPVDLIMVNDEVARLYQNSTR 788


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +2

Query: 206  ENEGLDDLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDSTQNRKQTHSSAQDKINILVND 385
            EN+ LD+ V  I E L  SLN+      +   E LL+   ++ +Q+ ++ +  +    +D
Sbjct: 3980 ENQDLDEEVNDIPEDLSNSLNE--KLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDD 4037

Query: 386  IKLYE 400
             K  E
Sbjct: 4038 NKALE 4042


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 458 KSLGGDILSEFCKYAASQC 514
           K + G IL ++C YAA  C
Sbjct: 107 KHIPGSILLQYCMYAAYHC 125


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 164  VSVEDIEKVIKEPLENEGLDDLVTRIAE--HLQG 259
            + +E  EK   EP+   G++D +T IAE   LQG
Sbjct: 1319 ILIEKAEKCKDEPVILAGIEDNITLIAEIADLQG 1352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,073
Number of Sequences: 5004
Number of extensions: 30432
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)