Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288...    31   0.42 
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    30   1.3  
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818           29   2.3  
09_04_0233 - 15890085-15890234,15890345-15890551,15891112-158913...    29   3.0  
12_01_0998 - 10118994-10119310,10120231-10120363                       27   6.9  
08_02_1539 - 27690412-27690588,27690694-27690834,27691493-276915...    27   6.9  

>03_01_0371 +
           2883418-2883967,2884097-2884176,2886283-2886339,
           2887152-2887207,2888006-2888079,2889511-2889798,
           2890043-2890120,2890359-2890882,2891315-2891438,
           2891619-2891767,2891983-2892137,2892477-2892682,
           2892768-2892901,2892983-2893284,2893514-2893617,
           2893858-2893928
          Length = 983

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 18/70 (25%), Positives = 38/70 (54%)
 Frame = +2

Query: 161 VVSVEDIEKVIKEPLENEGLDDLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDSTQNRKQ 340
           ++ +ED ++ I+  L+   + +   RIAE  +   +   LA++K   E+   D+ +N K 
Sbjct: 471 LLRLEDHKQQIESMLQRFKMSNFFVRIAESDEPLWSNKKLAVSKVPKEQSYSDNQENNKG 530

Query: 341 THSSAQDKIN 370
           + S+A + I+
Sbjct: 531 SRSNAYNTIS 540


>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
            525209-525401,525978-526330,526693-526791,526864-526935,
            527062-527213,527338-527386,527755-527885,528067-528307,
            528392-528565,528656-528797,529236-529282,529370-529450,
            530170-530271,530345-530440,531437-531444,531575-531616,
            531830-531894,534761-534853,534888-534959,535303-535509,
            536318-537226,537503-538158
          Length = 1429

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 234  LGLQNIYKEASIKLVWLLPKKRPKNCFKIQHKTGNKLIHQLRTKLI 371
            L ++ + K+ S  +++L  K+ P NCF I  KT N L +++ T ++
Sbjct: 1138 LNIEQLQKKDSPDVIFLGEKQCPDNCFDITSKT-NVLYNKINTFVV 1182


>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
          Length = 743

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/63 (20%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +2

Query: 239 IAEHLQGSLNQIGLAIAKETAEK-LLQDSTQNRKQTHSSAQDKINILVNDIKLYEKGIKT 415
           + E L+  ++++  +IA+   +K + +   + + +   S QDK+N+L  ++   E+ I+ 
Sbjct: 222 LVEQLKQEIHRLKSSIAQAEDDKHVFEGKLREKLEALDSLQDKVNLLSQEVNAKEEAIRE 281

Query: 416 FAA 424
            ++
Sbjct: 282 LSS 284


>09_04_0233 -
           15890085-15890234,15890345-15890551,15891112-15891356,
           15891618-15891831,15892890-15893036
          Length = 320

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 182 EKVIKEPLENEGLDDLVTRIAEHLQGSLNQIGLAIAKETAEKLL 313
           EK++  P E E L   + R  EHL    N+  +   +ET  + L
Sbjct: 82  EKLVTNPSEKEQLKTFILRAREHLDEKENEESMPNNRETDTRFL 125


>12_01_0998 - 10118994-10119310,10120231-10120363
          Length = 149

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 303 SAVSLAIARPI*LRLPCRCSAILVTRSSRPSFSN 202
           S + L+I RP   RLP   +A++V +++ PS S+
Sbjct: 101 SCLLLSIGRPRRQRLPAATAAVVVQKAAAPSSSS 134


>08_02_1539 -
           27690412-27690588,27690694-27690834,27691493-27691588,
           27691694-27691786,27691909-27692103,27692340-27692438,
           27692527-27692753,27692841-27692973
          Length = 386

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 152 HLEVVSVEDIEKVIKEPLENEGLDDLVTRIAEHLQGSLNQIGLAIAKE 295
           H EV  +E I+   ++ +++ GLD L+ R+   +QG + Q  + I +E
Sbjct: 185 HPEVPLME-IKHCTEKFIQDAGLDYLIIRLCGFMQGLIGQYAVPILEE 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,223
Number of Sequences: 37544
Number of extensions: 166858
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)