Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318C03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23648-6|AAA28032.2| 390|Caenorhabditis elegans Hypothetical pr... 36 0.018
U61947-7|AAB03137.1| 735|Caenorhabditis elegans Hypothetical pr... 34 0.071
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass... 31 0.38
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 31 0.38
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 31 0.38
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 31 0.38
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 31 0.66
U41026-4|AAA82351.2| 265|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical pr... 29 1.5
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 29 2.7
U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine rece... 28 3.5
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 28 3.5
AC006701-3|AAF60394.2| 198|Caenorhabditis elegans Mediator prot... 27 6.2
Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical p... 27 8.1
Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical pr... 27 8.1
>L23648-6|AAA28032.2| 390|Caenorhabditis elegans Hypothetical
protein F44B9.5 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.018
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = +2
Query: 161 VVSVEDIEKVIKEPLENEGLDDLVTRIAEHLQGSL----NQIGLAIAKETAEKLLQDSTQ 328
V++VE + K+ E ENE L++ R+AE L G+L ++ G++ A E A++L D +
Sbjct: 229 VITVEYLPKM--ERRENESLEEFTARVAETLAGNLKIAVSKFGISDATEAAKRLRTDRER 286
Query: 329 NRK 337
+K
Sbjct: 287 AKK 289
>U61947-7|AAB03137.1| 735|Caenorhabditis elegans Hypothetical
protein C06G3.9 protein.
Length = 735
Score = 33.9 bits (74), Expect = 0.071
Identities = 22/93 (23%), Positives = 40/93 (43%)
Frame = +2
Query: 221 DDLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDSTQNRKQTHSSAQDKINILVNDIKLYE 400
+++++ I E L + ++ L S N K++ S+ DK L + +E
Sbjct: 468 EEILSVIVEKLNQETTTLLRKKVQDIQAHQLVASVANSKKSLSAIGDKCRQLYDSFNTFE 527
Query: 401 KGIKTFAAEQQAPFIKYLLKSLGGDILSEFCKY 499
TFA + +YLLK++G +I Y
Sbjct: 528 TATSTFADPLGSDLRQYLLKTVGNEIALALLSY 560
>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform d protein.
Length = 1379
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 152 HLEVVSVEDIEKVIKEPLENEGLDDLVT--RIAEHLQGSLNQIGLAIAKETAEKLLQDST 325
H+EV VED+ ++K + E DD++ ++ H + + ++ I E EK+ D
Sbjct: 730 HIEVEIVEDVTNILKTYVIGERADDVLAEEQLRLHYEQTADKTPSPIPLEKVEKIYVDEL 789
Query: 326 QNRK 337
Q K
Sbjct: 790 QKDK 793
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform b protein.
Length = 4034
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 152 HLEVVSVEDIEKVIKEPLENEGLDDLVT--RIAEHLQGSLNQIGLAIAKETAEKLLQDST 325
H+EV VED+ ++K + E DD++ ++ H + + ++ I E EK+ D
Sbjct: 730 HIEVEIVEDVTNILKTYVIGERADDVLAEEQLRLHYEQTADKTPSPIPLEKVEKIYVDEL 789
Query: 326 QNRK 337
Q K
Sbjct: 790 QKDK 793
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform a protein.
Length = 1633
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 152 HLEVVSVEDIEKVIKEPLENEGLDDLVT--RIAEHLQGSLNQIGLAIAKETAEKLLQDST 325
H+EV VED+ ++K + E DD++ ++ H + + ++ I E EK+ D
Sbjct: 730 HIEVEIVEDVTNILKTYVIGERADDVLAEEQLRLHYEQTADKTPSPIPLEKVEKIYVDEL 789
Query: 326 QNRK 337
Q K
Sbjct: 790 QKDK 793
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform c protein.
Length = 7548
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 152 HLEVVSVEDIEKVIKEPLENEGLDDLVT--RIAEHLQGSLNQIGLAIAKETAEKLLQDST 325
H+EV VED+ ++K + E DD++ ++ H + + ++ I E EK+ D
Sbjct: 730 HIEVEIVEDVTNILKTYVIGERADDVLAEEQLRLHYEQTADKTPSPIPLEKVEKIYVDEL 789
Query: 326 QNRK 337
Q K
Sbjct: 790 QKDK 793
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 30.7 bits (66), Expect = 0.66
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 170 VEDIEKVIK--EPLENEGLDDLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDSTQNRKQT 343
+E +E +K E + E L+ L+ EHLQ L+Q+G + KE ++++ Q Q+
Sbjct: 553 IEQLEAKLKAVEQAKAEALNSLLAE-KEHLQAQLHQLG--VEKEEKLEMVKVQLQQAAQS 609
Query: 344 HSSAQDKINILVNDIK 391
SS + + + ++
Sbjct: 610 SSSVEQALRAEIEKLE 625
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 30.7 bits (66), Expect = 0.66
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 170 VEDIEKVIK--EPLENEGLDDLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDSTQNRKQT 343
+E +E +K E + E L+ L+ EHLQ L+Q+G + KE ++++ Q Q+
Sbjct: 553 IEQLEAKLKAVEQAKAEALNSLLAE-KEHLQAQLHQLG--VEKEEKLEMVKVQLQQAAQS 609
Query: 344 HSSAQDKINILVNDIK 391
SS + + + ++
Sbjct: 610 SSSVEQALRAEIEKLE 625
>U41026-4|AAA82351.2| 265|Caenorhabditis elegans Hypothetical
protein C28G1.2 protein.
Length = 265
Score = 30.3 bits (65), Expect = 0.87
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +2
Query: 143 KPAHLEVVSVEDIEKVIKEPLENEGLDDLVTRIAEHLQGSLNQIGLAIAKETAEKLLQDS 322
K H+ +++V+D ++I EN+ L +V + L + + K+ EKL Q+S
Sbjct: 129 KEKHV-LLNVDDAFQMISIMYENKSLQFVV--LVPSKPCGLKKALKKLTKQRFEKLFQES 185
Query: 323 TQNRKQTHSSAQDKINILVNDIKL-YEKGIKTFAAEQQAPFIKYLL 457
T Q D + +L+N L + IKT +++P I +L
Sbjct: 186 TVQLVQIMIPKLDVLQLLINSKVLGLQPPIKTSLKYKESPRISKML 231
>Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical
protein C11E4.3 protein.
Length = 411
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 498 YLQNSDSMSPPKDFNKYLIKGACCSAAKVFIPFSYSFISFTK 373
Y+ NS ++ F Y+ C A F+P S+SF SF +
Sbjct: 364 YVWNSAEVNEEVCFRFYVYVCVCVCAVLHFLPHSFSFFSFNR 405
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +2
Query: 158 EVVSVEDIEKVIKEPLENEGLDDLVTRIAEHLQG---SLNQIGLAIAKETAEKLLQDSTQ 328
E++S+ED+E + E ++N L+ +I + L G +++ GL E +K L+D
Sbjct: 531 ELISIEDMELALNEEIDN--LETEEKKIDQELAGVGKNVDSDGLRQELEERQKRLEDEAP 588
Query: 329 NRKQTHSSAQDKINI 373
R +H Q + N+
Sbjct: 589 AR--SHEMQQLEANV 601
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +2
Query: 179 IEKVIKEPLENEGLDDLVTRIAEHLQGSLNQIG-----LAIAKETAEKLLQDSTQNRKQT 343
++K+ L+N L+D+V R+ E + L ++ L KE + LQ++ N
Sbjct: 657 VDKLESISLQNVSLEDVVNRLCESYKKLLVRVAELETELEYEKE-KNRALQETINNSSSV 715
Query: 344 HSSA-QDKINILVNDIK 391
S Q+K+N + ND K
Sbjct: 716 DSKINQEKLNKINNDKK 732
>U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine
receptor, class w protein117 protein.
Length = 372
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 429 CSAAKVFIPFSYSFISFTKILILS 358
C+ K FIPFSYSF S++ + +S
Sbjct: 25 CNFEKNFIPFSYSFQSYSSEISVS 48
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 164 VSVED-IEKVIKEPLEN-EGLDDLVTRIAEHLQGSLNQIGLAIAKETAEKLLQ 316
+ ++D + ++KE + LD+++ + EHLQ S+ + AK ++LL+
Sbjct: 20 IEIKDYVSAILKENSDEITSLDEVMDAVGEHLQASVENLCEVGAKNACQQLLK 72
>AC006701-3|AAF60394.2| 198|Caenorhabditis elegans Mediator protein
20 protein.
Length = 198
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 416 FAAEQQAPFIKYLLKSLGGDILSEF 490
F AEQ A ++ LL+S+GGD+ F
Sbjct: 7 FEAEQTAKSVERLLESIGGDLHGTF 31
>Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical
protein T05G5.9b protein.
Length = 658
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 278 LAIAKETAEKLLQDSTQNRKQTHSSAQDKINILVNDIKLYEKGIK 412
+ IAKE + LLQ+ Q + + S + K++ I EK ++
Sbjct: 395 IEIAKEKVDHLLQNERQRSENENGSLKSKLSSATKQIHSLEKELQ 439
>Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical
protein T05G5.9a protein.
Length = 660
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 278 LAIAKETAEKLLQDSTQNRKQTHSSAQDKINILVNDIKLYEKGIK 412
+ IAKE + LLQ+ Q + + S + K++ I EK ++
Sbjct: 397 IEIAKEKVDHLLQNERQRSENENGSLKSKLSSATKQIHSLEKELQ 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,537,021
Number of Sequences: 27780
Number of extensions: 165988
Number of successful extensions: 557
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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