Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.3  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   5.8  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   5.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 256 RKPQSNWSGYCQRNGRKIASRFNT 327
           ++ Q   +G C++ G KIA   N+
Sbjct: 441 KRRQREAAGNCRKRGEKIARHINS 464


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 309 CFKIQHKTGNKLIHQLRTK 365
           C + Q  T NK+++ L+TK
Sbjct: 75  CNEKQKHTANKVVNYLKTK 93


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 309 CFKIQHKTGNKLIHQLRTK 365
           C + Q  T NK+++ L+TK
Sbjct: 75  CNEKQKHTANKVVNYLKTK 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,724
Number of Sequences: 438
Number of extensions: 1837
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)