Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   3.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   5.2  
SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    25   5.2  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   6.8  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 452 DVITTFKNNTTSIQWEMRGRIVVGSF 375
           DVI+TF N    + W+ R  IV  S+
Sbjct: 467 DVISTFANMAQDLSWKPRRTIVFASW 492


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 235  KRNTLFCVHCALYDAY 282
            K   LFC+H  LYDA+
Sbjct: 1441 KNYVLFCIHHVLYDAW 1456


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +3

Query: 279 IPCVVQSR*KHILEXXXXXXXXXXXXXXKFYSERPNHDPPSHFPLDRGRVVFE 437
           +PC+ Q +  ++ E               F+SE P   PP+ +  D G  +++
Sbjct: 753 VPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPT-YKFDIGTDIYD 804


>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 202 QSGGGPCGYRSTGSTGSSP 146
           +S  GP G R+ G+ GS+P
Sbjct: 37  ESNSGPAGARAAGAPGSTP 55


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 205 DQSGGGPCGYRSTGST 158
           D++GG PC  R TGS+
Sbjct: 223 DKNGGMPCSKRQTGSS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,375
Number of Sequences: 5004
Number of extensions: 31669
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)