Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318C01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893...    29   2.3  
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992...    29   2.3  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    28   4.0  
01_05_0276 - 20309224-20309910                                         28   5.2  
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765...    27   6.9  

>11_03_0011 +
           8934346-8934398,8936014-8936198,8936334-8936425,
           8937699-8937768,8937856-8937971,8939050-8939146,
           8939965-8940044,8940198-8940392,8940548-8940631,
           8940709-8940769,8941530-8941590,8942023-8942116,
           8942188-8942260,8942573-8942655,8943241-8943431,
           8943563-8943572
          Length = 514

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 296 IPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSALSFPTGSRSCC 430
           +P K    I PT   Y G  F K L   +  RS  S     R+CC
Sbjct: 333 LPFKEKQVITPTGSVYTGVEFSKRLCGISVIRSGESMENALRACC 377


>02_02_0411 -
           9928175-9928187,9928385-9928575,9929044-9929126,
           9929444-9929516,9929588-9929681,9930100-9930160,
           9930824-9930884,9930963-9931046,9931196-9931390,
           9931526-9931605,9932595-9932691,9934198-9934313,
           9934407-9934476,9935439-9935530,9935661-9935823
          Length = 490

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 296 IPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSALSFPTGSRSCC 430
           +P K    I PT   Y G  F K L   +  RS  S     R+CC
Sbjct: 308 LPFKEKQVITPTGSVYTGVEFSKRLCGISVIRSGESMENALRACC 352


>02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996,
            33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 136  SAGADSTPYCPCCDTRTGHRRSDLLHTDNTTRTKRN 243
            S    STP  PC  TR+    S L +  + TR KR+
Sbjct: 1135 SRNRPSTPVSPCSSTRSDSASSILSYMGDVTRGKRS 1170


>01_05_0276 - 20309224-20309910
          Length = 228

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 336 CEVGLIQECA-FSGIVRHKVCVVQRAVYTKQGVAFC 232
           C+ GL+QE     G++R K  + +  VYT    AFC
Sbjct: 68  CKSGLVQEAMKLFGLMREKGSIPEVVVYTAVVEAFC 103


>09_04_0658 +
           19275129-19275363,19275453-19275544,19276440-19276509,
           19276617-19276735,19277026-19277122,19277229-19277308,
           19277443-19277637,19277727-19277810,19277931-19277991,
           19278682-19278742,19279162-19279255,19279357-19279429,
           19279834-19279916,19280008-19280154
          Length = 496

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +2

Query: 296 IPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSALSFPTGSRSCC 430
           +P      I PT   Y G  F K L   +  RS  S     R+CC
Sbjct: 333 LPFTEKQIITPTGSIYMGVEFCKKLCGVSIVRSGESMENALRACC 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,374,286
Number of Sequences: 37544
Number of extensions: 257775
Number of successful extensions: 700
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)