Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   3.9  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   6.8  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   9.0  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -2

Query: 487 YFCFWFIVAIYLIFCIRF*SLYRYINLVIDNFVFAHIIEI*PQNIPKTIIRMR---PYEK 317
           +FCF+F  +++  F   F SL  + N         H+++I  Q    +++      P + 
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSL--HFNFFFRLCRHKHLLDIPDQTTLSSLLHRHTRLPRDV 164

Query: 316 RRNH 305
           RR H
Sbjct: 165 RRKH 168


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 229 FEDYFRQYASNSGNTLLLRY 170
           ++DY+  Y+SN+ NT +  Y
Sbjct: 134 YDDYYPAYSSNAPNTAISNY 153


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 314 SFLVRPHSYNSFWNVLWLNFNNVCKNKII 400
           SFL+  +S N F +V W N ++V KN+++
Sbjct: 286 SFLLHNNSPNKFVSVAWGN-DSVIKNRLM 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,745
Number of Sequences: 5004
Number of extensions: 31163
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)