Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318B09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.5  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   4.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 305 MISSFLVRPHSYNSFWNVLWLNFNNVCKNKIIYN 406
           +++S+     S  +F  + WL ++N   N IIY+
Sbjct: 293 IVTSYCKTCISGRAFQVLTWLGYSNSAFNPIIYS 326


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 329 PHSYNSFWNVLWLNFNNVCKNKIIYNQIYV 418
           P S N  +N  + N+N    NK+ YN  Y+
Sbjct: 87  PLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 332 HSYNSFWNVLWLNFNNVCKNKIIYNQIYVPV 424
           ++YN++ N  + N+  +  N I   QI VPV
Sbjct: 336 NNYNNYNNNNYNNYKKLYYNIINIEQIPVPV 366


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 258 KQYTFLLSTHLRITLGNTLVTVEIRYF*D 172
           K YT   ST  R+T  NT    ++++  D
Sbjct: 448 KNYTKFCSTEKRLTKQNTAFENQLQFVSD 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,728
Number of Sequences: 438
Number of extensions: 2280
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)