Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318B05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.32
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 28 0.73
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 28 0.97
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 27 1.3
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 1.7
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 2.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 3.9
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 26 3.9
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 26 3.9
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 5.2
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 6.8
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 6.8
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 9.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.0
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 29.5 bits (63), Expect = 0.32
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +3
Query: 234 VKVYSEYQDEKYDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPCVERIIIILH 413
V+ Y+ Y+ + + TK T VDS+H++ + S+ LL Q P +E+I IL
Sbjct: 46 VQEYTGYKGVTFIVSTKWNLT--VDSIHKLIPEIKSSPSACLLLVNQPYPVIEKITDILT 103
Query: 414 KDCMAHSSKL 443
K + +++ L
Sbjct: 104 KHGITNANLL 113
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +3
Query: 105 DDINVNTLPLLFALLEDEKNVINFHIYEHQEELWKEAFKNKSNVKVYSEYQD 260
+DI ++++P + LL D + I +++ H+E + K + + +VY ++D
Sbjct: 333 EDIEIDSIPAVRRLLGDVMSDIPYYMSHHKESIIKSVIREAN--RVYHLWKD 382
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.9 bits (59), Expect = 0.97
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +3
Query: 156 EKNVINFHIYEHQEELWKEAFKNKSNVKVYSEYQDEKYD-----IYTKI-PCTMIVDSVH 317
+ + ++ HIY + + E +N SNVKV + YQ+ ++ IY K+ +++ +H
Sbjct: 150 QSSPVHTHIYFNGGGSFLET-ENYSNVKVVARYQETDFEKSAAIIYVKVGKGNVVLTGIH 208
Query: 318 QMFYSLGS 341
F + GS
Sbjct: 209 PEFSAEGS 216
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 323 VLFSGVKQVYEALETITG*SLCRKDNNNLTQRLYGTFIKAENTYELHCKCS 475
V+F G+ ++ + L+ G L RLY T ++ + Y H KC+
Sbjct: 201 VVFQGLDRLEQVLKESKGPFLLGDHLTETDVRLYTTIVRFDPVYVQHFKCN 251
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 138 FALLEDEKNVINFHIYEHQEELWKEAFKNKSNVKVYSEYQDEKYDIYTKIPCTMIVDSVH 317
F +L D + I+ + E +E +K + +SN+ + + +E YD IP +V +
Sbjct: 19 FMILFDPSSSISL-LKEKVQETYKSLYPFESNINIRNIKNEESYD----IPNEYLVGEIF 73
Query: 318 QMFYSLGSNKFMKLLKRLQG 377
+ F LK+L G
Sbjct: 74 PTNSKVIVESFSSPLKKLDG 93
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 135 LFALLEDEKNVINFH----IYEHQEELWKEAFKNKSNVKVYSEYQDEKY 269
L ALL++++ + H IYE ++LW E + + ++V Y+D +
Sbjct: 18 LMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVM--YEDHSF 64
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 160 FSSSKRANNNGKVLTLISSSISKIGADFSLNKVIFNYSIE 41
FS+ ++A N + T + +IS I +NK++ NY+++
Sbjct: 340 FSNDQKAENPFEWATSLLKTISIIDEVELINKILINYTMQ 379
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 133 NGKVLTLISSSISKIGADFSLNKVIFNYSIETN 35
+G TL+++ ++ G D L V+ NY I T+
Sbjct: 333 SGARSTLVATDVAARGLDIPLVDVVINYDIPTD 365
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 162 NVINFHIYEHQEELWKEAFKNKSNVK 239
+VINF IYE E LW + F + ++
Sbjct: 137 SVINF-IYEKNERLWSDPFVSSQRLR 161
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 157 SSSKRANNNGKVLTLISSSISKIGADFSLN 68
SSS N+NG V L S S++ D LN
Sbjct: 510 SSSSHNNHNGNVRNLHSGSMNNYNTDSLLN 539
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 411 VRLLLSFRHKDYPVIVSR 358
V+LL +KDYP +VSR
Sbjct: 420 VQLLKGLDYKDYPTVVSR 437
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 93 LLIEDDINVNTLPLLFALLEDEKNVINFHIYEHQEELWKE 212
L I+D + V T P + + +E + +F + +E WKE
Sbjct: 398 LYIDDSVYVFTRPGVIIAISNEGSTSSFKVEIDLKEHWKE 437
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +3
Query: 102 EDDINVNTLPLLFALLEDEKNVI-----NFHIYEHQEELWKEAFKNKSNVKVYSEYQDEK 266
E+D + LPLLF+ D ++ I N + E + L K K++ + ++
Sbjct: 85 EEDFDTENLPLLFSSFSDNESDILEPDLNTRVAEDNDVLLSRYSKIKNSASCRNTFEHSA 144
Query: 267 Y 269
Y
Sbjct: 145 Y 145
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 282 KIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPCVERIIIIL 410
+I ++ D V ++Y+ F RL+G+ C+ +++I+
Sbjct: 1047 EIGSKVVDDRVRGLYYAQSQVLFGYYRSRLKGSRCINDLLVII 1089
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,390
Number of Sequences: 5004
Number of extensions: 45048
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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