Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   6.8  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   6.8  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -1

Query: 254 RFHLITKRKLNSNFIILSFMKMKIEKYLKRASNIFLSKLYLQLFWYF*NYLLNKEFFQ*S 75
           +++ I  R++  NF       +   K    +  +     +LQ FWY     L++   + +
Sbjct: 188 QYYRICDRRVKVNFKDDYTRYLSTRKLENDSETVTWLNTFLQQFWYIFEPSLSERITEIT 247

Query: 74  DQIY-EIYQIYHENYKLSEF 18
           DQI  E    + ++  LSEF
Sbjct: 248 DQILSENVPSFIDSMALSEF 267


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 466 GGGTYPCRLTRGPTTSKNSILKIICAIQ*GIIQYCE 359
           G G  P ++T GP  SK    KI+  IQ  I + C+
Sbjct: 335 GNGLDP-QVTLGPVVSKTQFEKIVSYIQSAINEGCK 369


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 133 KYNFDKKILLALLRYFSIFIFM 198
           ++N    +L A+L YFS FIF+
Sbjct: 496 RFNRRLSLLFAVLTYFSTFIFL 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,888
Number of Sequences: 5004
Number of extensions: 36939
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)