Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   1.3  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   2.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   3.9  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   9.0  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 341 FYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQESTEKKVLKIS 502
           F S+++ K KISLY++K        D  L +    +R +  ++ ST+ K L ++
Sbjct: 167 FASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVR-IANVEFSTDGKYLLLT 219


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 416 DGVLHYYDSEIREVVKLQEST 478
           +G+L++YD++ RE++K   +T
Sbjct: 158 NGILYFYDTQTRELIKFLTNT 178


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 424 DSIISITMWNFLDII**YFGLILGHTIKSTFKDVVVFCVNL*QFSFCVEVVHFECD 257
           D I  I + NF+ +I  +FG  +  + + +F ++++ CV +       EV H   D
Sbjct: 371 DGIDKIDVQNFILLILKFFGFAISASDRRSFLNLIMSCVMVSIQQSSAEVGHSTSD 426


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 419 GVLHYYDSEIREVVKLQEST 478
           GVLHY D++ ++  +L EST
Sbjct: 95  GVLHYKDNKKQKTTRLIEST 114


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +3

Query: 243 HYCFISH-SKWTTSTQKENCYKFTQKTTTSLKVDFIVWPKIRPKYHYMMSRKFHMVMLMM 419
           HY  I    K    T  E   ++      SLK D  VW   RP   +++  +  +  + +
Sbjct: 129 HYISIEQFCKNMPKTTPEEVLEYEFNVCQSLKWDLYVWLPFRPLQGFLLDCQTVLPKVAV 188

Query: 420 ESF 428
           E F
Sbjct: 189 EKF 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,907
Number of Sequences: 5004
Number of extensions: 38687
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)