Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318A03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 28 0.97
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 1.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.2
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 5.2
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 25 6.8
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual 25 6.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.8
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 6.8
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.0
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 27.9 bits (59), Expect = 0.97
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 242 SICYLNSLL*YYFI 201
++CYLNSL+ YYFI
Sbjct: 621 NLCYLNSLIQYYFI 634
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 1.3
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Frame = +3
Query: 159 QGPL-KAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMTPV 335
Q P+ K K + ++A KI KR++ + ++++ +KQR +R Q +P
Sbjct: 179 QKPIEKPKKEKIEATPKIDGGKRLKNEKSSAEISQTSKQRPSRRSARVRMATDNAQKSPS 238
Query: 336 NV-FPKAT--KFTRTVVNKDRVFTDTSRQVVSQPLNTPNLRRQIN 461
+ PK T K R + + + + ++QP++T ++ Q++
Sbjct: 239 PIPSPKKTAKKRVRFAGSLEELPKFSLEYQLAQPISTVDMYAQVH 283
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 5.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -1
Query: 314 SLHFEMF*LQSSIPLLCKFSQFVSSICYLNSLL*YYFISSIHNLWFSFERSLLNTLLSMF 135
SL F F L P F S L L +F + L FSF S L L +F
Sbjct: 85 SLSFS-FPLSQKRPFPNFLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIF 143
Query: 134 ILSFR--PDVYFLFLY 93
I+ F P ++FLF +
Sbjct: 144 IVYFSSFPILHFLFFF 159
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +3
Query: 126 RQNKHGKQGVQQGPLKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLK 305
R+++ G+ GP AKP+ ++ S+ R + + +A + + L+
Sbjct: 336 REDRMGRNAASSGPSHAKPRSTSVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELR 395
Query: 306 MQRRGQ 323
+RR Q
Sbjct: 396 RERRRQ 401
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 370 LLSTKIECSQIHPGKLSHSL*THLILDVKSTINVD-L*EIKQLVHKKYIK 516
+L+ + + PGK HS T LIL++ T +D IK +KYIK
Sbjct: 231 ILAEMLSARPLFPGKDYHSQIT-LILNILGTPTMDDFSRIKSARARKYIK 279
>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 276 PSALQVQPICLEHLLSEFSSLILFYF*HP 190
P L++QP EHLL++ + L+L Y P
Sbjct: 209 PENLKIQPDAFEHLLNQ-AGLVLEYSIEP 236
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 6.8
Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Frame = +3
Query: 123 KRQNKHGKQGVQ--QGPLKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRD-ARLKL 293
+++NK K + Q L +K +++ + + + R + A KLAE+ +RD K+
Sbjct: 398 EQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKI 457
Query: 294 EHLKMQRRGQMTPVNVFPKATKFTRTVVN-KDRVFTDTSRQVVSQPLNTPNLRRQINNKR 470
+ + + +N K +++ KD+ + Q+ Q + + + + + +
Sbjct: 458 KDFEKIEQDLRACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQ 517
Query: 471 RFVGNK 488
R + N+
Sbjct: 518 RDILNE 523
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 209 YFISSIHNLWFSFERSLLNTLLSMFILSFRPDVYFLFLYDF 87
+F IH+L F + + + M LSF + +FLF + F
Sbjct: 43 FFEGGIHSLLFFYPKRNWWFFIKMRYLSFFFEFFFLFSFAF 83
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 263 KFSQFVSSICYLNSLL*YYFISSIHNLWFSFERSLLNTLLSMFILSFRPD 114
+ + + + +LNSLL + + +++L+ S L L SM LS R +
Sbjct: 479 ELGRMIEDLPFLNSLLRTFLPTLVYSLFISISPFLFRWLSSMQGLSSRAE 528
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,975
Number of Sequences: 5004
Number of extensions: 35293
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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