Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318A01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 83 3e-17
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 43 2e-05
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 36 0.004
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.034
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 33 0.034
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 0.97
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 27 1.3
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 1.7
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 2.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.2
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 27 2.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 5.2
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 5.2
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 5.2
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 6.8
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 6.8
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 6.8
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 6.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 6.8
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.8
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.0
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 9.0
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 9.0
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 82.6 bits (195), Expect = 3e-17
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
Frame = +2
Query: 80 DIKSVLIVDGVGAKCAELLNAYGIATT-TKAKISKEELLMEIPNHDALVVRSATQVTKEV 256
DIK +L+++ V L G K +S+++L+ +I A+ +RS T++T+ V
Sbjct: 55 DIK-ILLLENVNQSALSNLKDEGYQVEFLKTSMSEDDLVEKIKGVHAIGIRSKTRLTRRV 113
Query: 257 LDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVP 436
L+A L V+G G + +D+D A ++G+ V N+P AN+ S EL ++ LAR V
Sbjct: 114 LEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGD 173
Query: 437 ASTALKAGRWDRALYTGSELAGKTLAIL 520
S L G W++ E+ GKTL I+
Sbjct: 174 RSLELHRGEWNKVSSGCWEIRGKTLGII 201
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 43.2 bits (97), Expect = 2e-05
Identities = 26/83 (31%), Positives = 38/83 (45%)
Frame = +2
Query: 272 KLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTAL 451
KL V G AG +N+DVD A + GV V N P + L + R A +L
Sbjct: 85 KLFVTG--AAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSL 142
Query: 452 KAGRWDRALYTGSELAGKTLAIL 520
+ G+W + L + GK + I+
Sbjct: 143 RLGKWRQNLSLTDDPYGKRVGII 165
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 35.9 bits (79), Expect = 0.004
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 248 KEVLD-AGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLAR 424
KE++D +K + GAG + +DV + +G+ V + P A + ++ LML R
Sbjct: 71 KEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALR 130
Query: 425 HVVPASTALKAGRWDRALYTGSELAGKTLAIL 520
L W+ + GKTL IL
Sbjct: 131 GFNQGIFELHKNNWNANCKPSHDPEGKTLGIL 162
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.034
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -3
Query: 360 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSS 184
+L TP TP +P STS S P P PT+ S T ++ L T TT S + + SS
Sbjct: 129 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSNPLPTTSTSCTTSTS-IPPTGGSS 185
Query: 183 SLEXXXXXXXXXXXXLRSSAHLAPTPSTIKTDLMSTTI 70
SL +S + PT ST TD S+ +
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIPPT-STSSTDTNSSPL 222
Score = 31.1 bits (67), Expect = 0.10
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -3
Query: 360 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSS 184
+L TP TP +P STS S P P PT+ S T +++ L T TT S + SS
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSSPLPTTSTSCTTSTSI--PTGGSS 241
Query: 183 SLEXXXXXXXXXXXXLRSSAHLAPTPSTIKTDLMSTTI 70
SL +S + PT ST TD S+ +
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIPPT-STSSTDTNSSPL 278
Score = 29.9 bits (64), Expect = 0.24
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 363 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 211
G TP TP +P STS STP P P + S T S++ L++ TT S
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPP--PASTSSTGTSSSPLLSTSTSCTTSTS 398
Score = 28.7 bits (61), Expect = 0.56
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 363 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 211
G TP TP +P STS STP P P + S T S++ L + TT S
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPP--PASTSSTGTSSSPLPSTSTSCTTSTS 344
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = -3
Query: 414 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*V 235
T N S+ L P +T TP T+ S P + P T S S+++ VT
Sbjct: 528 TTTNCTTSTSVLYTSTP---VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 584
Query: 234 AERTTRAS 211
TT +
Sbjct: 585 PVTTTNCT 592
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 354 ITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 211
+T TP T+ S P + P T S S+++ VT TT +
Sbjct: 486 VTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCT 533
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/95 (24%), Positives = 36/95 (37%)
Frame = -3
Query: 351 TPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSSSLEX 172
T TP + T STP + P T + S + L T +T + + S+S+
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCT-TSTSVPY 563
Query: 171 XXXXXXXXXXXLRSSAHLAPTPSTIKTDLMSTTIL 67
+ SS + TP T ST++L
Sbjct: 564 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 598
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 32.7 bits (71), Expect = 0.034
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = -3
Query: 498 ASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSS-HALSALAPGALITPTPFLPAES 322
+SSLP + S P+ S++ T+ + +V SS H + P L P+ F+ A+
Sbjct: 116 SSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQ 175
Query: 321 TSMLSTPAPARPTTFSFTPASNTS 250
S L TP P P + S P S
Sbjct: 176 LSRLPTPLP--PPSSSSLPTGTIS 197
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 0.97
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = -3
Query: 327 ESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSSSLEXXXXXXXXX 148
ES+S+ +T +P +TF T +S +S+ T + ++ S +S+ SSS
Sbjct: 238 ESSSLTNTVSPTE-STFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTS--------S 288
Query: 147 XXXLRSSAHLAPTPSTIKTDLMSTT 73
+ S + TPSTI T + T
Sbjct: 289 SGSSQDSTTIDSTPSTIATSTLQPT 313
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 477 RARSHLPAFSAVEAGTTWRARTNI-NVQVSSHALSALAPGALITPTPFLPAESTSMLSTP 301
+ +S +P + V G+ W A I N+ S + ++ ++P TP LP+ + L P
Sbjct: 83 KGKSGVPKKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLP 142
Query: 300 APARPTTFSF 271
+ P F
Sbjct: 143 SITEPIVALF 152
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 333 PAESTSMLSTPAPARPTTFSFTPASNTS 250
P+ ++ +PAP T S +PA+NTS
Sbjct: 125 PSSISNSSESPAPINSATASMSPANNTS 152
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 384 ALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTR 217
++SAL+ + + PT + S S PAP P + S +P ++ V +R
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASR 284
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 483 VYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGA 358
+ R R HL + A E T WR + + + LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 179 KEELLMEIPNHDALVVRSATQVTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVIN 358
KEE +I + +TQ+ + +K + + A +D+I DS G G +N
Sbjct: 660 KEEAQKQISQSLIADQQLSTQIGSVGMGKKQAVKELRKLQAKIDSIIADSMSPMGTGAVN 719
Query: 359 AP 364
+P
Sbjct: 720 SP 721
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 136 QRLRNRHHYQGQDLQGRTSYGDTQPRRSG 222
QR ++G+ +GR +YG T P R G
Sbjct: 86 QRENRGSRFRGRGQRGRGNYGHTAPNRRG 114
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/67 (26%), Positives = 38/67 (56%)
Frame = -3
Query: 456 AFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF 277
A S+V ++ + + +SS + SA +P + ++ + + +E +S L + + A P+T
Sbjct: 464 ASSSVSVPSSSSVQPQSSTPISSSS-SASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTS 522
Query: 276 SFTPASN 256
S TP+S+
Sbjct: 523 SSTPSSS 529
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 396 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 280
+ S A+S P ++ P PA T M + P RPT+
Sbjct: 117 LGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 432 TTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTP 301
T +R ++N+ S +A S A ++ +PA STS S P
Sbjct: 524 TPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGP 567
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = -3
Query: 456 AFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF 277
++ V+ T + +V ++ LS + P +L + S+S +ST ++P+T
Sbjct: 16 SYLVVDGATPRTFAPSASVSINYGTLSTVFP-SLYRRASTSSSSSSSSISTSHDSQPSTS 74
Query: 276 SFTPASNTS 250
S +P+S ++
Sbjct: 75 SSSPSSTST 83
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 354 ITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLV 244
+TPTP A T+ + A +T S T + TS+V
Sbjct: 34 VTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIV 70
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 384 ALSALAPGALITPTPFLPAESTSMLSTPA 298
+LS + P + +P+P A STS+ S PA
Sbjct: 32 SLSEINPSSFQSPSPSPFASSTSLASKPA 60
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 426 WRARTNINVQVSSHALSALAPGALITPTPFL 334
W+ TN +QV ++ L L P + PFL
Sbjct: 96 WKTSTNPTLQVRAYMLDLLLPFFTLDLLPFL 126
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 502 ASELAASVQSPVPPA-SLQRSGSWDHVASQNQHQRAGQLA 386
A + + +S +PP+ SL R+G V++QN RA LA
Sbjct: 191 AKKASVKSKSVLPPSKSLARTGLPAEVSTQNNANRAALLA 230
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = -1
Query: 512 RGSCQRARCQCTEPGPTC-----QPSAQWKLGPRGEP 417
+G R T P PTC + + W+ P G+P
Sbjct: 618 KGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQP 654
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 287 GRAGAGVDNIDVDSAGKKGVGVINAPG 367
G+A +N V+S GKKG ++N G
Sbjct: 1344 GKAERFSENAGVESIGKKGKNLLNESG 1370
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -3
Query: 357 LITPTPFLPAESTSMLSTPAPAR------PTTFSFTPASNTSLVT*VAERTTRAS 211
LI PTP + S + + P+PA P+ S P+ ++SL + VA + + S
Sbjct: 292 LIAPTPTISPPSANTVGNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 9.0
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = -3
Query: 486 PVYRARSHLPAFSAVEAGTTWRARTNI---NVQVSSHALS-ALAPGALI-TPTPFLPAES 322
P++ S +P +V + RA + I + SHA A P A + + PA +
Sbjct: 242 PMHTYSSAVPGPISVPSAPYGRASSTIAEVSPMYGSHAAPYASTPSAAVGSSRGSTPASA 301
Query: 321 TSMLSTPAPARPTTFSFTPA 262
T +S PA PTT ++ PA
Sbjct: 302 TVPIS-PARGFPTTSAYNPA 320
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 396 VSSHALSALAPGALI---TPTPFLPAESTSMLSTPAPARPTTFS-FTPASNTSL 247
+S L+A P + +P P P + S+ TP+ + PT S P S+ SL
Sbjct: 584 ISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASL 637
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -3
Query: 426 WRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF-SFTPASNTS 250
WRA N N+ ++S S PG + + AE +L+ +P T ++ A +
Sbjct: 302 WRAAPNPNILLNSDYTSVSIPGYVFSRV--YMAEFLELLAKKVSKKPATLEAYNKARPQT 359
Query: 249 LVT*VAE 229
+V AE
Sbjct: 360 VVPKAAE 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,144
Number of Sequences: 5004
Number of extensions: 35017
Number of successful extensions: 157
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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