Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H12f
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   0.93 
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    24   4.9  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    24   4.9  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    24   4.9  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    24   4.9  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    23   8.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    23   8.6  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    23   8.6  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    23   8.6  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +3

Query: 108 ILVFKILNAQKTSKLDSQQILF-ITSKRKY----LSWQSIRDYEPFLFF 239
           I + ++ N     K  +  IL  ITSKR      ++WQ++   EPFL +
Sbjct: 43  ISILRVFNKPPIKKFHNSNILKDITSKRNATPAKIAWQAMTTREPFLVY 91


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 148 NWTVNKSCLLHRSGNIYLGRVYA 216
           NW ++ SC L +S +I  G  +A
Sbjct: 34  NWYIHDSCFLAKSWHINTGNKFA 56


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 87  KQFYVPFIL--VFKILNAQKTSKLDSQQILFI 176
           K F  P  L  VFK+ +A +  +LDSQ + +I
Sbjct: 474 KNFVSPNTLLDVFKVFDAMEDVELDSQSLSYI 505


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 104 IYIGV*NFECTKNIKIGQSTNLVYYIEAEIFILAEYT 214
           +Y+G  NFE  K I   Q+  + +  + ++ ++AE T
Sbjct: 709 LYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKT 745


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 84  RKQFYVPFILVFKILNAQKTSKLDS---QQILFITSKRKY 194
           RK  Y PFIL  K+ ++  T + D+   +++L IT K+ +
Sbjct: 36  RKFHYSPFILQEKVQSSNHTIRSDTKLWKRLLKITGKQAH 75


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 125 FECTKNIKIGQSTNLV 172
           FE TKNIK+  +TN +
Sbjct: 280 FEATKNIKVIMATNRI 295


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 116 HQYKWYIKLFSRKTLL*NTVNLI 48
           H  K + KLFS  T++  ++NLI
Sbjct: 238 HLKKAFTKLFSEPTMVNKSINLI 260


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 274 ITYYQSLFNYFIKNKNGS*SRILC-QDKYFRFDVINK 167
           IT++ S+F +F    N S +R L  ++K +  D + K
Sbjct: 269 ITFFLSIFLFFYYPDNPSKARFLTDEEKLYTIDRVRK 305


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 6   SYENFKTFISDVKMY 50
           SYEN+K   SDV +Y
Sbjct: 610 SYENYKQSFSDVTIY 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,607
Number of Sequences: 5004
Number of extensions: 24633
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)