Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H12f
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029...    28   1.9  
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334...    27   3.4  
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391...    26   7.8  
06_01_0441 + 3130906-3131424,3131847-3132269                           26   7.8  
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479...    26   7.8  

>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
            13504409-13504497,13504612-13504696,13504852-13505011,
            13505096-13505160,13505296-13505349,13505437-13505527,
            13505685-13505986,13506084-13506365,13506451-13506764,
            13506920-13507080,13507202-13507305,13507379-13507535,
            13507652-13507896,13507995-13508327,13508428-13508751,
            13508816-13508899,13509001-13509169,13509610-13509731,
            13510538-13510792,13511115-13511252
          Length = 1377

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 50   SSLQCFIAAFYAKTVLCTIYIGV*NFECTKNIKIGQSTNLVYYIE 184
            S L  F++ F+A  V C +YIG+ N  C + + + + T  V+Y E
Sbjct: 1191 SELYQFVS-FHAVLVNCILYIGIQNSGCVQPVVVVERT--VFYRE 1232


>11_06_0606 +
           25432471-25432517,25433098-25433173,25433272-25433448,
           25433576-25433653,25433749-25433853,25434042-25434108,
           25434219-25434280,25434371-25434510,25434717-25434843,
           25434917-25435031,25435220-25435308,25435699-25435782,
           25435961-25436737
          Length = 647

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/53 (24%), Positives = 20/53 (37%)
 Frame = +3

Query: 78  FTRKQFYVPFILVFKILNAQKTSKLDSQQILFITSKRKYLSWQSIRDYEPFLF 236
           F+    Y    +V       K    D  ++L +       SW+S  D EP L+
Sbjct: 363 FSMVPLYYRDKIVLVAFGGNKKEPSDKVEVLVVLQNEHCFSWRSAPDVEPLLY 415


>11_08_0035 -
           27838495-27838655,27838750-27838897,27838987-27839192,
           27839291-27839972,27840074-27840247,27840963-27841181,
           27841281-27841400,27841540-27841680,27841762-27841801,
           27841969-27842129,27842506-27842589,27842659-27842721,
           27842808-27842885,27842980-27842984,27843228-27843313,
           27843354-27843544,27844089-27844166,27844255-27844365,
           27844757-27844927,27845026-27845198,27845748-27845928
          Length = 1090

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 120 KILNAQKTSKLDSQQILFITSKRKYLSWQSIRDYEP 227
           K+L ++  + L+ +Q+L ITSK  Y    ++R Y P
Sbjct: 212 KVLLSRDETNLEYEQLLLITSKCMYF---TVRSYMP 244


>06_01_0441 + 3130906-3131424,3131847-3132269
          Length = 313

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 91  SFMYHLYWCLKF*MHKKHQNWTVNKSCLLHRSGNIYL 201
           +F+++ YW + + +H    +  +N SC L  S ++ L
Sbjct: 272 AFLFYGYWLMFYRLHAHGIHLVLNLSCALQCSRSVVL 308


>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
            24548086-24548209,24548714-24548832,24548953-24549044,
            24549124-24549329,24549429-24549534,24549636-24549740,
            24549836-24549942,24550030-24550253,24550341-24550468,
            24550945-24551022,24551338-24552012,24552655-24552798,
            24552985-24553064,24553958-24554029,24554124-24554343,
            24554460-24554590,24555118-24555243,24555567-24555695,
            24556156-24556318,24556408-24556545,24557198-24557317,
            24557521-24557682,24557751-24557876,24558172-24558342,
            24558435-24558590,24559061-24559408
          Length = 1526

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 59   VNLIHLYVTDKCFKI 15
            +NL HL VTD+CF +
Sbjct: 1349 INLWHLEVTDQCFNV 1363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,177,034
Number of Sequences: 37544
Number of extensions: 121235
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)