Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H12f
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   0.92 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   0.92 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 0.92
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 123 ILNAQKTSKLDSQQILFITSKRKYLSWQSIRDYEP 227
           IL  +K +K D Q + F   K   + W+   D++P
Sbjct: 242 ILLCEKVAKEDIQ-VRFFEEKDGQVLWEGFGDFQP 275


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 0.92
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 123 ILNAQKTSKLDSQQILFITSKRKYLSWQSIRDYEP 227
           IL  +K +K D Q + F   K   + W+   D++P
Sbjct: 242 ILLCEKVAKEDIQ-VRFFEEKDGQVLWEGFGDFQP 275


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 151 NFDVFCAFKILNT 113
           NF  +C F  LNT
Sbjct: 144 NFKAYCLFSFLNT 156


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 118 NTNINGT*NC 89
           N N+NGT NC
Sbjct: 149 NLNLNGTVNC 158


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 99   VPFILVFKILNAQKTSKLDSQQI 167
            +PF+  F ++   KTS     QI
Sbjct: 934  LPFVYTFNVIKLTKTSGTVQAQI 956


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,631
Number of Sequences: 438
Number of extensions: 1595
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)