Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   2.2  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    25   5.2  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    25   5.2  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    25   6.8  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   9.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 387 NAASP--GIDKVPLLRLRNGALQAGLNERLQKIVAMRKEVENQRKT 518
           NA  P  G+ K+ +  LRN    AG++++ + IVA+R E   + +T
Sbjct: 204 NARRPQSGLLKITVGSLRNVTHSAGISKQTEMIVAIRAEDLERART 249


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 280 PSQLVYVTFPLSRCTLIREI 339
           PS L Y  FP S CT + EI
Sbjct: 170 PSTLNYYAFPKSVCTSVNEI 189


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 122 RFNVTSFHAAWLRASVWSCRR 184
           RFN +  HA WLR +  S RR
Sbjct: 179 RFNNSPQHATWLRHNTLSLRR 199


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 268 ESTMPSQLVYVTFPLSRCTLIREISQSLWT*MFQCAK 378
           E  +PS  VY     +RC  I+E S+S W  M  C K
Sbjct: 267 EYKLPSN-VYEVLHDTRCVKIQEDSESFWI-MAHCLK 301


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/79 (24%), Positives = 33/79 (41%)
 Frame = +3

Query: 240  SFEEETIRRRIDNAVATGVCYISPEPMYSDKGDFSEPLDLDVSMCKEKKNAASPGIDKVP 419
            S + ET   R         C+ +P P  S  G +S    +  S+    K AA+P +  + 
Sbjct: 1736 SIDNETFIERNFTDTERKYCFAAPNPQASFAGRWSAKEAVFKSLGISGKGAAAP-LKDIE 1794

Query: 420  LLRLRNGALQAGLNERLQK 476
            ++   +GA +  L+    K
Sbjct: 1795 IISSESGAPEVVLHGEAAK 1813


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 447 EERHFSVSIMEPYRFQAMRHSSFLCTLKHLSPE 349
           ++RH S+S +     Q  R  SF+ TLK+  PE
Sbjct: 93  KKRH-SLSYLHSLESQLARLESFIMTLKNSDPE 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,558
Number of Sequences: 5004
Number of extensions: 42669
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)