Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 99  YSCVSFVGVLMLLVFTP 149
           + C+S V ++ML++F P
Sbjct: 402 FLCISLVYIIMLIIFIP 418


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 304 FPLSRCTLIREISQSLWT*MFQCAKKRRMPHRL 402
           FP +    I E+  S W   +  A  + M H L
Sbjct: 306 FPSNSWVAINELQDSFWLEQYSWALFKAMSHML 338


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 304 FPLSRCTLIREISQSLWT*MFQCAKKRRMPHRL 402
           FP +    I E+  S W   +  A  + M H L
Sbjct: 274 FPSNSWVAINELQDSFWLEQYSWALFKAMSHML 306


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 283 SQLVYVTFPLSRCTLIREISQSLWT*MFQCAKKRR 387
           S L    +P +R   IRE ++ ++  M    KKRR
Sbjct: 124 STLQRAEYPTNRSLFIREQTEEMYREMLLEHKKRR 158


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 253 RQSDGESTMPSQLVYVTFPLSRCTLIR 333
           R+ DGE     +L+Y   P+S    +R
Sbjct: 371 RELDGEKQKTDRLLYSVLPISVANELR 397


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 6   LGLAYVISAWIEGDRSGVDALLNLWTYLPFLYSCVSFVGVLML 134
           LGL     AW + +  G DAL +L  ++ +  S    +  L L
Sbjct: 80  LGLNLGFLAWAKHNPRGKDALWSLVPHMAWQLSTAHLLAQLFL 122


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 253 RQSDGESTMPSQLVYVTFPLSRCTLIR 333
           R+ DGE     +L+Y   P+S    +R
Sbjct: 371 RELDGEKQKTDRLLYSVLPISVANELR 397


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 329 IRVHRLRGNVTYTSCDGIVDSP 264
           +R+HR RG+V   S +G   SP
Sbjct: 305 LRIHRGRGSVHNGSNNGSPRSP 326


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 402 QAMRHSSFLCTLKHLSPEALRNLPY 328
           +A     F  T  +LSPE L+  PY
Sbjct: 65  EAQAWFGFAGTPGYLSPEVLKKEPY 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,678
Number of Sequences: 438
Number of extensions: 2907
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)