Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H07f
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   1.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   1.8  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   2.4  
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   5.6  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    24   7.4  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    24   7.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   9.8  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +3

Query: 186 CSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTL 308
           C   SY   +  S  SI V    C LH   LC C L   TL
Sbjct: 664 CKAFSYFSQVACSCKSITV----CPLHIEYLCKCDLSNKTL 700


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 246 CGFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKE 344
           CG C    +  C+C LH  T    S+  P + +
Sbjct: 362 CGACFEPINAKCYCGLHSKTYPCSSLPSPSISK 394


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 298 RCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 182
           + + +KH  ++ ++QK +    L K LR +R  E  E+L
Sbjct: 45  KVERRKHAQVQLEQQKREERLALRKSLREQRKRELAERL 83


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 328 RRMEQKHRVLRCKEQKHRVLRCK-EQKPQYTAMLHKELRSERM*EQPEQLQLR 173
           +RMEQK ++   KE++  + R K EQ+  +   +    +++   E+ E LQ +
Sbjct: 37  KRMEQKRKLDEIKEREKELKREKEEQRAAHAEKIRTRRQAKADRERMELLQAK 89


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 249 GFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELN 350
           GFCS+      F +L    LCF S++ P   E+N
Sbjct: 469 GFCSVS-----FVALMIPILCFPSVKNPTPAEMN 497


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = -1

Query: 292 KEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQL 176
           KE++ + L+ K+QK +   +  ++L  ER+  + ++L++
Sbjct: 34  KEREKKYLQEKQQKDEQRELKKRKLEEERLKYEEKKLRI 72


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 198  SYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSL 293
            S++RSL S L       G  +L     C CSL
Sbjct: 1078 SFLRSLESVLLQRLTKAGTATLMEIVPCLCSL 1109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,062,661
Number of Sequences: 5004
Number of extensions: 15275
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)