Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H07f
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   0.42 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.55 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 157 GLLVWQLERSCM 122
           G  +WQ+ERSCM
Sbjct: 65  GSKIWQMERSCM 76


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = -1

Query: 328  RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGLL 149
            ++ +Q+    + ++Q+ +  + + Q+PQ      ++ + ++  +QP+Q Q       GL+
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLV 1557

Query: 148  VWQLERSC----MKQGQLPKEQRQQ 86
            V QL+R       + G+    Q+QQ
Sbjct: 1558 V-QLQRGYNSGNNRSGEQANSQQQQ 1581



 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 327  RPQVKELNKPRP 362
            +PQ +E NKP+P
Sbjct: 1015 KPQSQEANKPKP 1026



 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -1

Query: 280  HRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQ 179
            H   + ++Q+PQ      ++ + ++  +QP+Q Q
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQ 1528


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 243 YCGFCSLHRST 275
           YC  C LHR T
Sbjct: 542 YCVACGLHRDT 552


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 3   PSTPCSSPRS-GRHCHKLPV 59
           P++ CSSPRS  +    +PV
Sbjct: 601 PTSVCSSPRSEDKEVEDMPV 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,230
Number of Sequences: 438
Number of extensions: 1101
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)