Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   3.0  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   9.0  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    25   9.0  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 177 EPHLGFEHHHISEDEPVDYYNSPKYAFNYGVADPNTGDVKSQHET 311
           EP   F H    +D   D    P ++ N   +  ++    SQH T
Sbjct: 104 EPSPSFNHSFFEKDNARDIPQQPSHSQNPSSSSSSSSSQSSQHST 148


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 144 DLQPSGTFLHAEPHLGFEHHHISEDE 221
           D QPS   LH     GF+++   +DE
Sbjct: 243 DNQPSSAELHEAQKFGFDNNESDQDE 268


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 144 DLQPSGTFLHAEPHLGFEHHHISEDEPVDYYNSPKYAFNYGVADPN 281
           +L+P     +AE  LGF+   I  +   D+Y       +Y    PN
Sbjct: 43  ELEPQNVAPNAEIPLGFDLSGIQFNMTPDFYLRMNQGMDYAFNQPN 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,686
Number of Sequences: 5004
Number of extensions: 45447
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)