Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317H06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130... 33 0.14
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 29 1.7
03_06_0446 - 33985668-33985940,33986008-33986085,33986151-339862... 29 3.0
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 28 4.0
01_01_1177 - 9378230-9378301,9378385-9378498,9379641-9379786,938... 28 4.0
05_04_0303 - 20010761-20011756 28 5.2
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 27 6.9
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 27 6.9
01_05_0060 + 17742566-17742826,17744132-17744246,17746818-177469... 27 6.9
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653... 27 9.1
07_03_1794 - 29580767-29584189 27 9.1
>07_03_1093 +
23912303-23912467,23912671-23912801,23913079-23913087,
23913146-23913228,23914494-23914596,23915988-23916066,
23916174-23916274,23916371-23916479
Length = 259
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 333 GQYSLVEPDGSVRTVDYTADSLHGFNAVVSKSGPNVH 443
G Y LV D +V V+Y+ ++ G+N VV+ +G +V+
Sbjct: 109 GNYFLVRHDAAVSCVEYSYSTVSGYNLVVATAGRHVN 145
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 138 HVDLQPSGTFLHAEPHLGFEHHHISEDEPVDYYNSPKYAFNYGVADP 278
H + + T H H H+H+ + D + P + ++YGV DP
Sbjct: 765 HHEQTTTTTHHHYHQHEHMSHYHMGPSDTADSPSPPHFVYHYGV-DP 810
>03_06_0446 -
33985668-33985940,33986008-33986085,33986151-33986233,
33986709-33986766,33987677-33987933,33988140-33988413
Length = 340
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 392 LTPRLQCCGFQKRPECACNTRPSC-TTCSXW 481
+T ++ G QK P C TR SC +T S W
Sbjct: 262 VTSKMNFSGQQKDPRTICGTRSSCDSTVSKW 292
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 178 SACRKVPDGCKSTCFVGRKYVSTRLCAQATVAKSITPFKDIFVKTAK*W 32
SAC P + +VG+ + R +A TPF DI V+ A+ W
Sbjct: 242 SACNTHPHRLGTGGYVGKSFQWAREDEEAAQLSRPTPFADIPVQRARNW 290
>01_01_1177 -
9378230-9378301,9378385-9378498,9379641-9379786,
9380004-9380086,9381178-9381233,9381619-9381822,
9381914-9382159
Length = 306
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 183 HLGFEHHHISEDEPVDYYNSPKYAFNYGVADPNTGDVKSQHETRDGDVV 329
H+G I++D Y SP A +YG+ D + KSQ DG VV
Sbjct: 252 HIGKSVEEIAQDIKRPKYFSPSEAVDYGIIDKVLYNEKSQ---EDGGVV 297
>05_04_0303 - 20010761-20011756
Length = 331
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 153 PSGTFLHAEPHLGFEHHHISEDEPVDYYNS-PKYAFNYG 266
P G H P +G HHH + P+ +Y S P F++G
Sbjct: 228 PMGGHHHHPPQIGHFHHHPAA-RPLGHYGSGPGAGFDHG 265
>04_04_0285 - 24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 27.5 bits (58), Expect = 6.9
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Frame = +3
Query: 135 KHVDLQPSGTFLHAEPHLGFEHHHISE-----DEPVDYYNSPKYAFNYGVADPNTGDVKS 299
+ VDLQ S +A+P+ + HHI + + P D N +AD N K
Sbjct: 1047 REVDLQ-SQLADNAKPNDLLQSHHIEKTTSTNNSPGDVGVPSDSTQNVDIADGNVKKGKQ 1105
Query: 300 QHETRDGDVVKGQYSLVEPDGSVRTVDYTADSLHGFNAVVSKSGPNVH 443
+ + D++ V+P+ R +D + + F+ V++ G H
Sbjct: 1106 KKRKKKSDLLNSVPQKVDPNSDHRDID---NGVQDFSFSVAQEGRMEH 1150
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 80 FGDSRLCT*PCAHILPTDKTRGLAT---IGHFSTCRA 181
FGDS C ++L K+ GLA +G ++ CRA
Sbjct: 116 FGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRA 152
>01_05_0060 +
17742566-17742826,17744132-17744246,17746818-17746993,
17747323-17747418,17747504-17747782
Length = 308
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 189 GFEHHHISEDEPVDYYNSPKYAFNYGVAD 275
G I ED DY+ SP A +YG+ D
Sbjct: 211 GKPEEQIDEDTKFDYFMSPWEAKDYGIVD 239
>11_04_0305 - 16162063-16162096,16162282-16164365,16165283-16165351,
16168317-16169288,16169548-16169650,16170427-16170509
Length = 1114
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 192 ILDEALHVEKCPMVASPRVLSVGS--M*AHGYVHKRLSPKVLPPLK 61
IL + LH+ +V +P + VGS + H + H L+ K P L+
Sbjct: 882 ILSQLLHLFMLQIVRAPAIKRVGSEFLLCHDHGHHSLTAKAFPRLQ 927
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 213 EDEPVDYYNSPKYAFNYGVADPNTGDV 293
E E V+Y YA NY + DP+ G+V
Sbjct: 216 ESEKVNYLRQKLYAMNY-IIDPSKGEV 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,125
Number of Sequences: 37544
Number of extensions: 315433
Number of successful extensions: 769
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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