Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317H06f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41060-1|AAA96258.2| 749|Homo sapiens estrogen regulated LIV-1 ... 33 0.61
BC039498-1|AAH39498.1| 433|Homo sapiens SLC39A6 protein protein. 33 0.61
BC113435-1|AAI13436.1| 428|Homo sapiens potassium channel tetra... 29 9.9
BC111962-1|AAI11963.1| 428|Homo sapiens potassium channel tetra... 29 9.9
AB037738-1|BAA92555.1| 435|Homo sapiens KIAA1317 protein protein. 29 9.9
>U41060-1|AAA96258.2| 749|Homo sapiens estrogen regulated LIV-1
protein protein.
Length = 749
Score = 33.1 bits (72), Expect = 0.61
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 39 LAVFTKMSLKGVILLATVACAHSRVLTYFRPTKHVDLQPSGTFLHAEPHLGFEHHHI-SE 215
+++ + +SL GVIL+ + + L F V FLH PH HHH S
Sbjct: 326 ISIISFLSLLGVILVPLMNRVFFKFLLSFLVALAVGTLSGDAFLHLLPHSHASHHHSHSH 385
Query: 216 DEP 224
+EP
Sbjct: 386 EEP 388
>BC039498-1|AAH39498.1| 433|Homo sapiens SLC39A6 protein protein.
Length = 433
Score = 33.1 bits (72), Expect = 0.61
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 39 LAVFTKMSLKGVILLATVACAHSRVLTYFRPTKHVDLQPSGTFLHAEPHLGFEHHHI-SE 215
+++ + +SL GVIL+ + + L F V FLH PH HHH S
Sbjct: 57 ISIISFLSLLGVILVPLMNRVFFKFLLSFLVALAVGTLSGDAFLHLLPHSHASHHHSHSH 116
Query: 216 DEP 224
+EP
Sbjct: 117 EEP 119
>BC113435-1|AAI13436.1| 428|Homo sapiens potassium channel
tetramerisation domain containing 16 protein.
Length = 428
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 62 FKGGNTFGDSRLCT*PCAHILPTDKTRGLATIGHFSTC 175
F+ + D+R+C P + +LP D+ G T+G+ +C
Sbjct: 139 FEDASQGSDTRIC--PPSSLLPADRKWGFITVGYRGSC 174
>BC111962-1|AAI11963.1| 428|Homo sapiens potassium channel
tetramerisation domain containing 16 protein.
Length = 428
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 62 FKGGNTFGDSRLCT*PCAHILPTDKTRGLATIGHFSTC 175
F+ + D+R+C P + +LP D+ G T+G+ +C
Sbjct: 139 FEDASQGSDTRIC--PPSSLLPADRKWGFITVGYRGSC 174
>AB037738-1|BAA92555.1| 435|Homo sapiens KIAA1317 protein protein.
Length = 435
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 62 FKGGNTFGDSRLCT*PCAHILPTDKTRGLATIGHFSTC 175
F+ + D+R+C P + +LP D+ G T+G+ +C
Sbjct: 146 FEDASQGSDTRIC--PPSSLLPADRKWGFITVGYRGSC 181
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,851,885
Number of Sequences: 237096
Number of extensions: 1712173
Number of successful extensions: 3286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3277
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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