Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317H06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 31 0.50
Z68316-2|CAA92681.1| 352|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical p... 28 3.5
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 3.5
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 28 3.5
AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical ... 28 3.5
Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81136-4|CAI46577.1| 738|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 31.1 bits (67), Expect = 0.50
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 398 PRLQCCGFQKRPECACNTRPSCTTC 472
P C ++P C C PSC TC
Sbjct: 133 PACDCAPVAQQPACDCQQNPSCVTC 157
>Z68316-2|CAA92681.1| 352|Caenorhabditis elegans Hypothetical
protein K08E4.3 protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.0
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 8/146 (5%)
Frame = +3
Query: 18 YVIXCHYLA-VFTKMSLKGVILLATVACAHSRVLTYFRPTKHVDLQPSGTFLHAEPH--- 185
++I CH L+ ++T + + ILL +A A+S V Y + ++ + E
Sbjct: 61 FIITCHLLSDMYTLLRILTSILL--IAFANSYVSDYVEKSSEASIEETNWVDEKEIRDRL 118
Query: 186 --LGFEH--HHISEDEPVDYYNSPKYAFNYGVADPNTGDVKSQHETRDGDVVKGQYSLVE 353
+ E HH E ++ N K + V+ RDG +V G +
Sbjct: 119 SVIAAEKFSHHYHEHPQIEVQNVTKTKSRSVIRSA----VEKTRRKRDGGIVSGPVATAL 174
Query: 354 PDGSVRTVDYTADSLHGFNAVVSKSG 431
G + T L FN +S+ G
Sbjct: 175 VTGMIGMTAKTVAELTSFNPRLSEGG 200
>Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 123 FRPTKHVDLQPSGTFLHAEPHLGFEHH-HISEDEPVDYYNSPKYAFNYGVADPNTGDVKS 299
F T+HV+ + +G L+ + F H H S D ++Y N+ Y F +G + +V
Sbjct: 578 FGETEHVEYK-NGEELYRKIWY-FPHEVHTSYDLRIEYCNTKDYTFQFGFVE---AEVNP 632
Query: 300 QHETRD 317
QH D
Sbjct: 633 QHVNSD 638
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 126 RPTKHVDLQPS-GTFLHAEPHLGFEHHHISEDEPVDYYNSPKYAFNYGVADP 278
R T H+ PS G+F PH ++ + P SP+Y FN+ +A P
Sbjct: 1210 RETNHLTPPPSDGSFSSPSPH----YYPTTTSTPNRMETSPEYMFNHEMAPP 1257
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 126 RPTKHVDLQPS-GTFLHAEPHLGFEHHHISEDEPVDYYNSPKYAFNYGVADP 278
R T H+ PS G+F PH ++ + P SP+Y FN+ +A P
Sbjct: 1210 RETNHLTPPPSDGSFSSPSPH----YYPTTTSTPNRMETSPEYMFNHEMAPP 1257
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.elegans
glp-1 gene,complete cds. ).
Length = 1295
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 126 RPTKHVDLQPS-GTFLHAEPHLGFEHHHISEDEPVDYYNSPKYAFNYGVADP 278
R T H+ PS G+F PH ++ + P SP+Y FN+ +A P
Sbjct: 1210 RETNHLTPPPSDGSFSSPSPH----YYPTTTSTPNRMETSPEYMFNHEMAPP 1257
>AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 123 FRPTKHVDLQPSGTFLHAEPHLGFEHH-HISEDEPVDYYNSPKYAFNYGVADPNTGDVKS 299
F T+HV+ + +G L+ + F H H S D ++Y N+ Y F +G + +V
Sbjct: 578 FGETEHVEYK-NGEELYRKIWY-FPHEVHTSYDLRIEYCNTKDYTFQFGFVE---AEVNP 632
Query: 300 QHETRD 317
QH D
Sbjct: 633 QHVNSD 638
>Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical
protein H12I19.5b protein.
Length = 596
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = +1
Query: 136 NTWTCNHRALFYMQSLI*DSNITTYPKTNPSTIITHR 246
N W NH +FY + + I + + +++HR
Sbjct: 451 NCWAANHARIFYDECKVQAKRIVQFSEAGCDPLVSHR 487
>Z81136-4|CAI46577.1| 738|Caenorhabditis elegans Hypothetical
protein W02B8.6 protein.
Length = 738
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 159 PMVASPRVLSVGSM*AHGYVHKRLSPKVLPPLKTS 55
P++ASPR+LS + +V LSP VL P+ S
Sbjct: 609 PLIASPRILSPVILDPFMFVPIILSPVVLDPVVLS 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,489
Number of Sequences: 27780
Number of extensions: 272877
Number of successful extensions: 853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -