Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317H06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   4.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 330 KGQYSLVEPDGSVRTVDYTADSLHGFN 410
           KG+  + EP GSVR    + D+++G +
Sbjct: 197 KGRLVITEPVGSVRPKFPSMDNINGLS 223


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 458 SCTTCSXWHLPLQLHLQSYRH 520
           +CT  + +   L+LHL+ Y H
Sbjct: 49  NCTYATKYCHSLKLHLRKYSH 69


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 210 ICGDVRILDEALHVE 166
           IC D+R LDE L  E
Sbjct: 228 ICEDMRFLDEPLSGE 242


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 210 ICGDVRILDEALHVE 166
           IC D+R LDE L  E
Sbjct: 228 ICEDMRFLDEPLSGE 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,505
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)