Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    29   0.42 
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    27   2.2  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   3.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   9.0  

>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = -1

Query: 443 CYKDYLQRLSC*IAVFMITIF*SETSLSALEKNLPSHFSVTRHIFPLRAICFVFMSMIIK 264
           C +D +  +S  + + + T F S  SLS L  NL S+F +    F +R +  V M +I K
Sbjct: 259 CLEDSISFISVIMGIDLGTWFASPESLSHLHDNLNSYFLLK---FFVRVLFGVCMILIWK 315

Query: 263 SF 258
           SF
Sbjct: 316 SF 317


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 16  FVSLKKYIKSSNTFIRKKCVRVLVYTRKK*NLFMALFFE 132
           F  L +Y+ S N          L   R+K NLFM L FE
Sbjct: 326 FAWLDEYLNSGNKINEFDAATKLEQFRRKNNLFMGLSFE 364


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 374 ETSLSALEKNLPSHFSVTRHIFPLRAICFVFMS 276
           E+  SA E  L   + +T+H  P  ++C+ F+S
Sbjct: 164 ESYSSASESPLKPKYRLTKHTQPCTSVCWNFLS 196


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 344 LPSHFSVTRHIFPLRAICFVFMSMIIKSFCL 252
           +PS FS+  HI P   I   F+ ++    CL
Sbjct: 224 VPSEFSLASHIIPCSNIPDHFLVLLETKICL 254


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 440  YKDYLQRLSC*IAVFMITIF*SETSLSALEKNLPSHFSVTRHIFPL 303
            + +++Q L   ++   +  F  E       KNLP +FS+ + I PL
Sbjct: 971  FSEFIQHLESEVSFNSLRSFVQEFEKKERLKNLPFYFSLHQTIGPL 1016


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 358  RWKKIYRHIFRLRVTFFRYAPSVLYSCL 275
            RWK IY H+ +L ++  R   +   SCL
Sbjct: 1259 RWKIIYDHVCKLCLSRSRSLRAASLSCL 1286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,317
Number of Sequences: 5004
Number of extensions: 31773
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)