Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317G05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    30   0.24 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   5.2  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   5.2  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   9.0  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
 Frame = -2

Query: 490 EQQDGKQ*LLL*EATSFTVLVALREFNIESPVGSVRDLRVLEHK--LRQFKLEFVGVQNP 317
           ++Q+ K+ LLL E T FT+   L  +N +S +  + +L+ L+ K  L + +  F  +   
Sbjct: 19  QEQNEKKPLLLDELTKFTI---LHPYNYDSHIKLIEELKRLDKKKELSEARKTFQSI--- 72

Query: 316 RHPIIDD-FVDVCLVQCPPRFRSYTDFV 236
             P+ +D +VD  L +C    R+  D+V
Sbjct: 73  -FPLSEDLWVDYLLDEC-KNCRTLDDYV 98


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 101 SIKDNEIELPRLRTSDDLLDSVISDCSEAGSPMACLKVKVLSYLDNKV 244
           SI++N +   R   + D  DSV+SD S   +  + ++V  L+++ + +
Sbjct: 304 SIENNFLYTKRRANTSDSFDSVLSDSSTTPTISSSVQVNSLAFITSSL 351


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 296 LCRCLSRPMPSPFPIL 249
           LCRC+ +   SP+PIL
Sbjct: 77  LCRCICKSNCSPYPIL 92


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 262 GEGIGRDKHRQSHL*SGGEDFGHQRIQV*TA--GVYVPKRGGL 384
           G G+G ++H Q++L    +    Q+  V T   G+Y+P   G+
Sbjct: 383 GHGLGLEEHEQTYLNPANKGTPVQKGNVFTVEPGIYIPDEIGI 425


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 230 LDNKVGVGSETGRALDETNIDKVIYDRVAR 319
           L NK G+G+  G ALD T+ D    +++AR
Sbjct: 273 LGNKPGLGNVGGGALDITDADIRNINKLAR 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,461
Number of Sequences: 5004
Number of extensions: 37833
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)