Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317G04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 79 2e-15
12_02_0891 + 24065001-24065101,24065260-24065345,24065902-240659... 75 3e-14
03_05_0548 + 25439649-25439734,25440712-25440799,25441160-254412... 63 2e-10
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365... 29 1.7
04_04_1687 - 35365766-35366356,35367137-35368135 29 1.7
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 29 3.0
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 5.2
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602... 27 6.9
02_01_0786 - 5863278-5863736,5863864-5864281,5864368-5864618,586... 27 6.9
12_01_0259 - 1905291-1905393,1905536-1905672,1905787-1905893,190... 27 9.1
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199... 27 9.1
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 27 9.1
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963... 27 9.1
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 27 9.1
02_04_0391 + 22576839-22577387 27 9.1
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 27 9.1
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/66 (54%), Positives = 47/66 (71%)
Frame = +1
Query: 322 LQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATALVFRSGKIVCTGT 501
LQN V+TV+L C L L I + R +EYNP RF V+M+I DP+ TAL+F SGK+VCTG
Sbjct: 47 LQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 106
Query: 502 RNEHDS 519
++E S
Sbjct: 107 KSEDHS 112
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 319 KLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVFRSGKIVCT 495
K+QN V + + ++L + Y +S Y P F G++ ++ P+ L+F SGKIV T
Sbjct: 136 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 195
Query: 496 GTR 504
G +
Sbjct: 196 GAK 198
>12_02_0891 +
24065001-24065101,24065260-24065345,24065902-24065965,
24066137-24066224,24066810-24066881,24067821-24067871,
24067940-24067984,24068086-24068178,24068265-24068366,
24068442-24068515,24068540-24068579
Length = 271
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +1
Query: 325 QNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATALVFRSGKIVCTGTR 504
+N V+TV+L C+L L I + R +EYNP RF V+M+I +P+ TAL+F SGK+VCTG +
Sbjct: 84 KNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 143
Query: 505 NEHDS 519
+E S
Sbjct: 144 SEQQS 148
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 319 KLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVFRSGKIVCT 495
K+QN V + + ++L + Y +S Y P F G++ ++ P+ L+F SGKIV T
Sbjct: 172 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 231
Query: 496 GTR 504
G +
Sbjct: 232 GAK 234
>03_05_0548 +
25439649-25439734,25440712-25440799,25441160-25441204,
25441407-25441478,25442402-25442452,25442527-25442571,
25442670-25442762,25442848-25442949,25443024-25443097,
25443130-25443160
Length = 228
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 15/81 (18%)
Frame = +1
Query: 322 LQNCVATVSLGCELKLLDIYCRTRYSEYNPA---------------RFQGVVMKILDPRA 456
LQN V+TV+L C+L L I + R +EYNP RF V+M+I +P+
Sbjct: 28 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKTQHEVLGDFVTICNIRFAAVIMRIREPKT 87
Query: 457 TALVFRSGKIVCTGTRNEHDS 519
TAL+F SGK+VCTG ++E S
Sbjct: 88 TALIFASGKMVCTGAKSEQQS 108
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 319 KLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVFRSGKIVCT 495
K+QN V + + ++L + Y +S Y P F G++ ++ P+ L+F SGKIV T
Sbjct: 132 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 191
Query: 496 GTR 504
G +
Sbjct: 192 GAK 194
>10_08_0914 +
21535519-21535797,21535961-21536339,21536425-21536568,
21536681-21536730,21536820-21536877,21536979-21537208
Length = 379
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +1
Query: 70 VEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPL 249
+E + E + + P+TP++ + VS + +S + NG + + P+
Sbjct: 18 IEMDEEEAAAAAIPPPQTPLEPMEYLSRSWSVSASEISKILFNG--SKKSFAAKRLPEMT 75
Query: 250 NPHNSMTALTPMPS 291
P NS+ A + +PS
Sbjct: 76 IPENSVVAASIVPS 89
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +1
Query: 163 VSGTNLSSQVVNGDVALTPTNSSFTPQPLNP-------HNSMTALTPMPSAST 300
+S N+S+ V NGD L P PQP P HN+ A +PS+ST
Sbjct: 369 ISNNNISAPVCNGDSLLVPP-ILMHPQPQPPADIQGARHNNGHAYADIPSSST 420
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 100 EMYSTPKTPIKAQNFSKEDAG-VSGTNLSSQVVNGDVALTPTNSSF 234
E+YSTPKTP+ ++ S ED G V+ + L ++ G P F
Sbjct: 637 ELYSTPKTPV--EHKSNEDHGSVAASLLQTKPRRGRARKRPQKKDF 680
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 214 TPTNSSFTPQPLNPHNSMTALTPMPSAST 300
TP N + TP PL P+ + + P P ST
Sbjct: 35 TPPNPATTPTPLTPNPNPSPTLPPPPMST 63
>08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,
6027187-6027258,6027354-6027425,6027784-6027855,
6027980-6028051,6028134-6028205,6028483-6028554,
6028791-6028865,6028970-6029041,6029134-6029199,
6029267-6029332,6029409-6029453,6029542-6029606,
6029697-6030076,6030455-6030653,6030725-6030883,
6030966-6031084,6031156-6031200,6031226-6031791,
6031871-6032021,6032117-6032454,6033702-6033765,
6034329-6034370,6035572-6035575,6035853-6036039,
6037252-6037323,6037687-6037758,6037867-6037938,
6038019-6038090,6038651-6038725,6038815-6038886,
6038988-6039053,6039163-6039228,6039348-6039392,
6039469-6039533,6039615-6039994,6040070-6040202,
6040354-6040512,6040599-6040717,6040805-6041015,
6041155-6041386,6041469-6041619,6041725-6042084
Length = 1952
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 163 VSGTNLSSQVVNGDVALTPTNSSFTPQPLN 252
V+G NL +V D L TN+S P LN
Sbjct: 1328 VTGNNLQLNLVANDFILDSTNNSILPSGLN 1357
>02_01_0786 -
5863278-5863736,5863864-5864281,5864368-5864618,
5864727-5864950,5865248-5865569
Length = 557
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +1
Query: 280 PMPSASTQAKSSIKLQN-CVATVSLGCELKLLDIYCRTRY-----SEYNPARFQGVVMKI 441
P + +AK ++L + C+ + + ++ I+ TRY S++NPARF K
Sbjct: 419 PAVATIRRAKVDVQLSDGCMIPRDMELLVPIMAIHHDTRYWGPDASQFNPARFANGASKA 478
Query: 442 LDPRATALVFRSGKIVCTG 498
+ F G +C G
Sbjct: 479 AKHPLAFIPFGLGSRMCVG 497
>12_01_0259 -
1905291-1905393,1905536-1905672,1905787-1905893,
1906012-1906090,1906256-1906342,1906987-1907265,
1907401-1908114
Length = 501
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 227 LLVGVNATSPLTTCELKFVPETPAS 153
L+ G TS L T +KF+ ETPA+
Sbjct: 302 LVAGYETTSVLMTLAVKFLTETPAA 326
>11_01_0261 -
1989988-1990090,1990232-1990368,1990483-1990589,
1990708-1990786,1990952-1991038,1991688-1991966,
1992109-1992822
Length = 501
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 227 LLVGVNATSPLTTCELKFVPETPAS 153
L+ G TS L T +KF+ ETPA+
Sbjct: 302 LVAGYETTSMLMTLAVKFLTETPAA 326
>06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 178 LSSQVVNGDVALTPTNSSFTP-QPLNPHNSMTALTPMPSASTQ 303
+ Q NG +++ T + F+ +PLNP + + PMP + Q
Sbjct: 1221 IPDQSSNGPGSVSYTANGFSEARPLNPSGPSSGMPPMPPSQNQ 1263
>05_03_0657 +
16694833-16694963,16695567-16695684,16696280-16696376,
16700126-16700232,16700473-16700595,16700791-16700944,
16701237-16701297,16701417-16701781,16701875-16703483,
16703697-16703940
Length = 1002
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 190 VVNGDVALTPTNS-----SFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLG 354
+V+ DVA T+S S + + + ++S T+ TP+P ST + S K + L
Sbjct: 510 MVDSDVADASTSSPSSIVSESKESTDKNDSDTSKTPLPDGSTDSSSLSKTKRSYRINILR 569
Query: 355 CE 360
CE
Sbjct: 570 CE 571
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 169 GTNLSSQVVNGDVALTP-TNSSFTPQPLNPHNSMTALTPMPSAS 297
G L S AL+P + SS +P P +P +S TAL+P+P +S
Sbjct: 217 GAGLLSPPAMSSAALSPMSTSSLSPLP-SPMSS-TALSPLPPSS 258
>02_04_0391 + 22576839-22577387
Length = 182
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 127 IKAQNFSKEDAGVSGTNLSSQVVNGD--VALTPTNS-SFTPQPLNPHNSMTALTPMPS 291
+ A++F+K++ L+++ N V + PTN QP N H L P PS
Sbjct: 25 VAAESFNKQEPEQPTNKLATKSFNKQKHVEIQPTNKLEQLIQPTNEHEQQQLLQPPPS 82
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 199 GDVALT-PTNSSFTPQPLNPHNSMTALTPMPSASTQA 306
G +A++ P+ S P PL P + TA P P+A +++
Sbjct: 159 GSLAMSSPSPSPTPPSPLTPAPATTAPAPTPTAKSKS 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,424,450
Number of Sequences: 37544
Number of extensions: 206474
Number of successful extensions: 659
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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