Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    28   0.97 
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   3.0  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   3.9  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   6.8  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   9.0  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 117 DDLLTAVITPTMSRDYYR-PWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEIS 284
           D  +   I  ++S++Y + P+K +  A     +  T ++   ++N D + F+PE IS
Sbjct: 107 DSAVAKTIEESISKNYPKCPFKVIGEAELLNRTIATDSRGNIEINADNEKFNPEVIS 163


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 87  DQDFG--LALTPDDLLTAVITPTMSR--DYYRPWKQMAMANRDVGSTITSNKDKFQVNLD 254
           D  FG  + L+P   +T ++   ++R  DY +   +   +N D   T+T      ++N +
Sbjct: 229 DTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEE 288

Query: 255 VQHFSPEE 278
           VQ    +E
Sbjct: 289 VQQKDEQE 296


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 345 HGYISRQFTRRYALPENCNPDT 410
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 486 ARSSWQPESWERSRSARR 433
           ++  WQP+SW+ SR+  +
Sbjct: 70  SKEGWQPKSWKSSRNENK 87


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 292 QPTATSSSKVSTRRGRTSMATSLVSSR 372
           QPT  S + + +  GR+S+A+S  SSR
Sbjct: 539 QPTRRSRTPIRSLSGRSSVASSRNSSR 565


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = +3

Query: 138 ITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVE 317
           +T ++   Y +P+   A      G          QV   V   +P+E  + + D  +  E
Sbjct: 146 LTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWE 205

Query: 318 GKHEERQDEHGYIS 359
           G+   R+DE   ++
Sbjct: 206 GEPINREDEESSLA 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,322
Number of Sequences: 5004
Number of extensions: 34652
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)