Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317G02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.62 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
 Frame = +2

Query: 29  KYKNVTAAIHPGIPT*PPSRSGLRAGAYS*RSPDGRHHAN---------DVQRLLPAVEA 181
           +++ V A++ P  P  P   S     AY+    D   H           D + LLP V  
Sbjct: 170 QFQTVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWV 229

Query: 182 DGDGQ*RRRFHHHLE 226
            G+ +   R   HLE
Sbjct: 230 GGESEALARLERHLE 244


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 204 VGSTITSNKDKFQVNLDVQHFSPEEISVKT 293
           VG+TIT  +D    + D+Q+    +I  +T
Sbjct: 306 VGTTITHLRDPDHHSTDIQNCDSVKIKFET 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,677
Number of Sequences: 438
Number of extensions: 2583
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)