Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.47 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.82 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.3  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   5.8  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   5.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.7  

>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 111 LRSAARPRPGLPSARKAVTPMSPL*NCPRT--ATPPSIPSTKTVTDTSWRNQTRTRPSDS 284
           L++A  P P   S   AV   S L   P    AT P   +  TVTD      +RT P D 
Sbjct: 92  LKNAGTP-PEAVSYNVAVPTKSILEKKPELVDATDPGEHNGDTVTDVEAGLASRTNPLDD 150

Query: 285 SMTSS 299
           S++ +
Sbjct: 151 SISQA 155


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 396  GXPLHSLLSSNSWTPRTHTYK 334
            G  + S+ S ++W PR H Y+
Sbjct: 1670 GTVIRSIRSHSTWDPRRHMYE 1690


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 201 ATPPSIPSTKTVTDTSWRNQTRTRPSDSSMTSS 299
           AT P   +  TVTD      +RT P D S++ +
Sbjct: 128 ATDPGEHNGDTVTDVEAGLASRTNPLDDSISQA 160


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 195 RTATPPSIPSTKTVTDTS 248
           RT  PP +P  +  TDT+
Sbjct: 637 RTLEPPIMPRVQNATDTT 654


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 186 NCPRTATPPSIPSTKTVTDTSWRN---QTRTRPSDS 284
           N P   T PS+P  K  T TS      +T T+ +DS
Sbjct: 64  NVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDS 99


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 186 NCPRTATPPSIPSTKTVTDTSWRN---QTRTRPSDS 284
           N P   T PS+P  K  T TS      +T T+ +DS
Sbjct: 66  NVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDS 101


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 198 TATPPSIPSTKTVTDTS 248
           T TPPS+P    V  T+
Sbjct: 51  TPTPPSVPVGSAVAGTA 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,354
Number of Sequences: 438
Number of extensions: 2579
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)