Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317F10f
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    75   8e-15
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    54   1e-08
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   1.2  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    27   2.1  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   2.1  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   4.8  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    25   8.4  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    25   8.4  

>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 74.5 bits (175), Expect = 8e-15
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = +1

Query: 94  DNLQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKE 273
           D+L  + E+  +     + +  +  R  ++L KGL+    D   V  WI      P+G E
Sbjct: 29  DHLDELEEQFTI---PTELLHRVTDRFVSELYKGLTTNPGDVPMVPTWII---GTPDGNE 82

Query: 274 RGKFLALDLGGTNFRVLIINL-GENHFDMQSKIYAIPKHIMTGTGIALFDHIAEXLANFM 450
            G +LALDLGGTN RV  + + G   FD+    Y +P+ +  GT  ALFD+IA+ +  F+
Sbjct: 83  HGSYLALDLGGTNLRVCAVEVQGNGKFDITQSKYRLPQELKVGTREALFDYIADCIKKFV 142

Query: 451 KE 456
           +E
Sbjct: 143 EE 144


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +1

Query: 244 YIQDLPNGKERGKFLALDLGGTNFRVLIIN-LGENHFDMQSKIYAIPKHIMTGTGI-ALF 417
           +I  LP G E G FLALD GGTN RV  I  LG+  ++M+     +P+  +    +  + 
Sbjct: 51  FISTLPTGAETGDFLALDFGGTNLRVCWIQLLGDGKYEMKHSKSVLPRECVRNESVKPII 110

Query: 418 DHIAEXLANFMKEH 459
           D +++ +  F+KEH
Sbjct: 111 DFMSDHVELFIKEH 124


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 110 ILCKLSTTMPIFYRYFPYLTPIGN 39
           ILC   T   I +RYFP+L  +G+
Sbjct: 233 ILCYFGTYSHIAFRYFPWLPHVGD 256


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 109 IREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQD 255
           IR++    +M D    E + RL   L + + R + D  +++C + YI++
Sbjct: 259 IRQQYPDTEMCDLYGVEHLIRLFVSLPELIDRTNMDSQSIECLLNYIEE 307


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 145 KQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPN 264
           ++IK+++  L   +K GL+ +DH    + C++  I D P+
Sbjct: 433 QEIKQLIRLLEELIKTGLATSDHRLLLLSCYVE-IHDSPS 471


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 253 DLPNGKERGKFLALDLGGTNFRVLIINLGENHFDMQSKI 369
           DLP  +   +   +D G +N+ V I+      F ++S +
Sbjct: 191 DLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTV 229


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 379 PKHIMTGTGIALFDHIAEXLANFMKE 456
           PK ++     +L  H+ E   NFM+E
Sbjct: 82  PKQVIVDAAKSLITHLEEIKVNFMRE 107


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 295 DLGGTNFRVLIINLGENHF 351
           DL GT   VLI N+G++H+
Sbjct: 130 DLVGTPITVLINNVGQSHY 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,643
Number of Sequences: 5004
Number of extensions: 42195
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)