Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317F10f
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 116 1e-26
Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical pr... 111 3e-25
Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical pr... 84 6e-17
AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical... 68 4e-12
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 29 1.4
Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical p... 27 5.7
Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical p... 27 5.7
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 27 10.0
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 116 bits (279), Expect = 1e-26
Identities = 60/125 (48%), Positives = 80/125 (64%)
Frame = +1
Query: 85 IVVDNLQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPN 264
I V N Q I+E C+ L ++D+Q++ IM + +++GL+ + K VK TY+ +PN
Sbjct: 26 IDVSNNQMIQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTK-KVAVKMLPTYVDSVPN 84
Query: 265 GKERGKFLALDLGGTNFRVLIINLGENHFDMQSKIYAIPKHIMTGTGIALFDHIAEXLAN 444
G E G FLALDLGGTNFRVL I L M KI+ +P+ IM GTG ALFDHIA +A
Sbjct: 85 GTESGDFLALDLGGTNFRVLHIKLQGKETKMTGKIFRVPESIMRGTGEALFDHIAGCMAK 144
Query: 445 FMKEH 459
FM E+
Sbjct: 145 FMGEN 149
>Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical
protein F14B4.2a protein.
Length = 500
Score = 111 bits (267), Expect = 3e-25
Identities = 56/117 (47%), Positives = 76/117 (64%)
Frame = +1
Query: 109 IREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFL 288
I+E C+ L ++D+Q++ IM + +++GL+ + K VK TY+ +PNG E G FL
Sbjct: 39 IQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTK-KVAVKMLPTYVDSVPNGTESGDFL 97
Query: 289 ALDLGGTNFRVLIINLGENHFDMQSKIYAIPKHIMTGTGIALFDHIAEXLANFMKEH 459
ALDLGGTNFRVL I L M KI+ +P+ IM GTG ALFDHIA +A FM E+
Sbjct: 98 ALDLGGTNFRVLHIKLQGKETKMTGKIFRVPESIMRGTGEALFDHIAGCMAKFMGEN 154
>Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical
protein H25P06.1 protein.
Length = 552
Score = 83.8 bits (198), Expect = 6e-17
Identities = 43/116 (37%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Frame = +1
Query: 133 KMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFLALDLGGTN 312
K+++ ++ +M L +++ +GL + +++T+ +++ +LPNGKERGKF+A+DLGGTN
Sbjct: 55 KLSNTTLRRMMSHLSDNMDRGLE-SGLERSTIAMLPSFVPELPNGKERGKFVAMDLGGTN 113
Query: 313 FRVLIINLGENHFDMQSKIY--AIPKHIMTGTGIALFDHIAEXLANFMKEHGVYEE 474
RV+++ L E M++K + +P M GTG LFD+IA+ L +F+ E + +E
Sbjct: 114 LRVMLMEL-EPGEPMRTKQFNTRMPNAAMHGTGQKLFDYIAKALCDFLVERELADE 168
>AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical
protein Y77E11A.1 protein.
Length = 451
Score = 67.7 bits (158), Expect = 4e-12
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Frame = +1
Query: 109 IREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFL 288
+ E ++ +Q++EI ++ +K GL++ +++ +Y+ LP+G E GK++
Sbjct: 8 VEEILAKFRLNREQLQEISEKVEQQMKMGLAKTQG--SSIAMLPSYVPALPDGTETGKYV 65
Query: 289 ALDLGGTNFRVLIINL-GENHFDMQSKI-YAIPKHIMTGTGIALFDHIAEXLANFMKEHG 462
A+DL G N R++++ + G + Y + H+M GTG LF I L F++E G
Sbjct: 66 AIDLSGKNLRIMLLTMNGAGTTPTHETVNYIVANHVMKGTGDQLFTFIVNCLQRFLQEFG 125
Query: 463 VYE 471
+ +
Sbjct: 126 LVD 128
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 106 RIREECEVLKMTDKQIKEIMCRLHNDL---KKGLSRADHDKATVKCWITY 246
++REEC L + ++ E L N++ +K + A+H + TV+ +TY
Sbjct: 365 KMREECTKLSVELDKLVENQINLRNEINHYRKLMENAEHLRTTVQTHVTY 414
>Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical
protein C41C4.5b protein.
Length = 887
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 134 FRTSHSSRILCKLSTTMPIFYRYFPY 57
F H+SR LC+L T + FPY
Sbjct: 249 FMNLHTSRCLCQLDTVSKALWPCFPY 274
>Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical
protein C41C4.5a protein.
Length = 849
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 134 FRTSHSSRILCKLSTTMPIFYRYFPY 57
F H+SR LC+L T + FPY
Sbjct: 211 FMNLHTSRCLCQLDTVSKALWPCFPY 236
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 119 SSRILCKLSTTMPIFYRYFPYLTPIGN 39
+S+++ LS P+F RYFP + N
Sbjct: 468 NSKLVDSLSNIKPVFNRYFPITVIVNN 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,216,201
Number of Sequences: 27780
Number of extensions: 233929
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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