Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317F10f
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   3.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.4  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 412 LFDHIAEXLANFMKEHG 462
           +FD +AE  A  M EHG
Sbjct: 34  VFDLVAEDKARCMSEHG 50


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 412 LFDHIAEXLANFMKEHG 462
           +FD +AE  A  M EHG
Sbjct: 34  VFDLVAEDKARCMSEHG 50


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 333 FRGKPF*YAVQNLCHTKTYNDW 398
           FR KP+ + +QN  +     +W
Sbjct: 370 FRSKPYRFGIQNGDYVVLETEW 391


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 333 FRGKPF*YAVQNLCHTKTYNDW 398
           FR KP+ + +QN  +     +W
Sbjct: 76  FRSKPYRFGIQNGDYVVLETEW 97


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 307 FHLNLMPKIYLSLF 266
           FH  +MP +Y+ +F
Sbjct: 130 FHNIIMPNVYIRIF 143


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 307 FHLNLMPKIYLSLF 266
           FH  +MP +Y+ +F
Sbjct: 130 FHNIIMPNVYIRIF 143


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 295 DLGGTNFRVLIINLGE 342
           D    NFR+LI N+ +
Sbjct: 391 DFNDVNFRILIANVND 406


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 9   ICKFEVVFKVIPYWR*VR 62
           IC   + F  I +WR VR
Sbjct: 172 ICSSAISFPAIVWWRAVR 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,704
Number of Sequences: 438
Number of extensions: 3140
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)