Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    29   0.56 
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   3.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   9.0  

>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 206 EETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKR 313
           E TDP+  + ++K  +  + E+E  YK KK +  K+
Sbjct: 362 EITDPEFAEKLIKAADAQIDEVEKQYKKKKIKKSKK 397


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 82  YYKLITFLLRFLTLSINSFLV*NKSG 5
           ++ L T  LR L+LSIN+F V   SG
Sbjct: 27  FFLLTTCQLRILSLSINAFCVFGASG 52


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 40  TESENVKEKLLICSTRLTNRCIETSEN 120
           TE E +KE      T L N    TSEN
Sbjct: 643 TEIEGIKESFASTDTGLQNNSTATSEN 669


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 134 LXRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHG-EFVVKEIEALYKLKKY 298
           L R++ +  D F   LH   + NS+ T P K +       + +V+E + L K +KY
Sbjct: 297 LEREYQKACDDFENSLHPSENSNSQATIPSKKRNFDDPTIDEMVQEEKLLNKQRKY 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,490
Number of Sequences: 5004
Number of extensions: 28310
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)