Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317F09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    32   0.24 
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850...    29   2.3  
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    27   6.9  
03_02_0488 - 8824980-8825267,8825364-8827775                           27   9.1  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 164 LFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRR 316
           L  ++LH + S  S   DPQ    +    EF+ +++EA+ K+ +Y A  RR
Sbjct: 188 LVNEKLHNLHSVASRCNDPQLTDFV--ESEFLEEQVEAIKKISEYVAQLRR 236


>05_03_0110 +
           8500204-8500460,8502544-8502612,8502725-8502790,
           8502885-8502963,8504270-8504390,8504486-8504581,
           8505403-8505515,8505612-8505689,8507777-8507893,
           8508194-8508293,8508463-8508563,8509093-8509110
          Length = 404

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 274 FNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEELCF 116
           FN  N K+  ++ Y YF+ +S   +   Y +  +S  +    PI++ + +L F
Sbjct: 116 FNILNKKIFDYFPYPYFVSVSHLLVGVLYCLVGWSFGLPKRAPINSTVLKLLF 168


>01_05_0495 +
           22705697-22705765,22705903-22706025,22708429-22708586,
           22709162-22709206,22709367-22709445,22709522-22709595,
           22709703-22709809,22711116-22711301,22711882-22711920,
           22712020-22712086,22712207-22712281,22713113-22713347,
           22713425-22713755,22714530-22714710,22714810-22714950,
           22715041-22715302,22715503-22715892,22717179-22717735,
           22718421-22718557,22718672-22718853,22718959-22719339,
           22719420-22719545,22719635-22719700,22720056-22721839,
           22721914-22722193,22722386-22722616,22723067-22723588,
           22723683-22723815,22723937-22724193
          Length = 2405

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -2

Query: 187 FMKPFSKQVETLRPISTQIEELCFLTFQYSDLS---DAYYKLITFLLRFLTLSINSF 26
           F+ P+SK ++ L    T  EEL      Y  LS   D    ++  ++R LT  +  F
Sbjct: 661 FLTPYSKSLKNLIDSKTLREELTTWAVSYDSLSIQKDHRSSVVPLVIRVLTPKLKKF 717


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 178 PFSKQVETLRPISTQIEELCFLTFQYSDLSDAYY 77
           P SK +E+ +  +    + C + FQ SDL D Y+
Sbjct: 167 PSSKSLESNQSPTLNDHQHCSMEFQQSDLEDKYH 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,861,674
Number of Sequences: 37544
Number of extensions: 141617
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)