Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317F09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032618-5|CAE17991.1| 83|Caenorhabditis elegans Hypothetical ... 77 6e-15
U28971-6|AAA68380.2| 300|Caenorhabditis elegans Hypothetical pr... 31 0.50
AF067937-7|AAN84819.1| 392|Caenorhabditis elegans Hypothetical ... 30 0.87
AF067937-6|AAF99915.1| 426|Caenorhabditis elegans Hypothetical ... 30 0.87
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 29 2.7
U28739-12|AAB93454.1| 200|Caenorhabditis elegans Hypothetical p... 28 3.5
Z83221-2|CAB05708.1| 444|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z83118-1|CAB05575.1| 975|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81552-6|CAB04489.1| 975|Caenorhabditis elegans Hypothetical pr... 27 6.2
U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF016445-2|AAC69064.1| 376|Caenorhabditis elegans Serpentine re... 27 6.2
AF125951-2|AAD14691.1| 643|Caenorhabditis elegans Hypothetical ... 27 8.1
>AL032618-5|CAE17991.1| 83|Caenorhabditis elegans Hypothetical
protein Y42A5A.5 protein.
Length = 83
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/64 (53%), Positives = 46/64 (71%)
Frame = +2
Query: 134 LXRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKR 313
+ +++P G F RL FSKN E D ++++ ++ GEFVVKEIEALY L+KYRAMK+
Sbjct: 1 MGKEYPGGSKWFHDRLKLAFSKNKEVQDSKQVEQLIARGEFVVKEIEALYSLRKYRAMKQ 60
Query: 314 RYYD 325
RYYD
Sbjct: 61 RYYD 64
>U28971-6|AAA68380.2| 300|Caenorhabditis elegans Hypothetical
protein B0244.5 protein.
Length = 300
Score = 31.1 bits (67), Expect = 0.50
Identities = 15/74 (20%), Positives = 36/74 (48%)
Frame = -2
Query: 319 ISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPIS 140
ISSL S ++ ++ + T+++ + +SF+++L Y + T+RPI
Sbjct: 90 ISSLSASSIMMVLRLLKMLSTSFTVYFLFFLIDDLSFYSLLGSYVGSTLLLYLATVRPIF 149
Query: 139 TQIEELCFLTFQYS 98
I+ + ++++
Sbjct: 150 YSIQISVRIVYKFA 163
>AF067937-7|AAN84819.1| 392|Caenorhabditis elegans Hypothetical
protein F22F7.1b protein.
Length = 392
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 250 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 161
+ FY YL LWI F +I KY PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302
>AF067937-6|AAF99915.1| 426|Caenorhabditis elegans Hypothetical
protein F22F7.1a protein.
Length = 426
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 250 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 161
+ FY YL LWI F +I KY PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
protein C18H2.1 protein.
Length = 1770
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Frame = +2
Query: 173 KRLHKVFSKNSEET----DPQKIQIMVKHGEFVVKEI-EAL-YKLK 292
K+ HK +S DPQK+ + + G FV+KE+ EAL Y+L+
Sbjct: 607 KKSHKTLESDSSPVLKLEDPQKVVLTLGRGMFVLKEMTEALTYRLR 652
>U28739-12|AAB93454.1| 200|Caenorhabditis elegans Hypothetical
protein C17G10.7 protein.
Length = 200
Score = 28.3 bits (60), Expect = 3.5
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = -2
Query: 340 MCLVIVIISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQV 161
MCL+++++ + SV+L L C N L MF+ + +++S + + Y +P
Sbjct: 24 MCLLMLVMINFVNSVILTLEICGEDSNMTLLMFFVNTFVVFLSMYGL---YNFRPVFLSP 80
Query: 160 ETLRPISTQIEELCF-LTFQYSDLSDAYYKLITFLLRFLTLSINS 29
L I L + L + + A + +T + F L I++
Sbjct: 81 NVLLKIILSSSALFYGLQMAETTSNSAIFVWLTISIVFFILEIHT 125
>Z83221-2|CAB05708.1| 444|Caenorhabditis elegans Hypothetical
protein C49A1.3 protein.
Length = 444
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 124 LCFLTFQYSDLSDAYYKLITFLLRFLTLSINSFLV 20
+C T Q+ D+ D Y +L+ L LT+ F+V
Sbjct: 262 ICLFTRQHLDMDDTYLELVFSLFPLLTIMQFIFMV 296
>Z83118-1|CAB05575.1| 975|Caenorhabditis elegans Hypothetical protein
F56G4.1 protein.
Length = 975
Score = 27.5 bits (58), Expect = 6.2
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Frame = -2
Query: 331 VIVIISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFT-ILAKYFMKPFSKQ-VE 158
VI IIS ++ L+ CF F L + + Y Y + + T IL + F K+ E
Sbjct: 844 VIFIISGCFGREMMVLVGCFLFLYTTLQVRFSYFYKISVDGTTSILTSKSTRVFLKKWFE 903
Query: 157 TLRPISTQIEELCFLTFQY--SDLSDAYYKLITFLLRFLTLSI 35
I I L L Q D K FL+ F TL +
Sbjct: 904 CSLLIICLIWTLVILASQMMEEDTFLCQNKFFAFLITFFTLMV 946
>Z81552-6|CAB04489.1| 975|Caenorhabditis elegans Hypothetical protein
F56G4.1 protein.
Length = 975
Score = 27.5 bits (58), Expect = 6.2
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Frame = -2
Query: 331 VIVIISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFT-ILAKYFMKPFSKQ-VE 158
VI IIS ++ L+ CF F L + + Y Y + + T IL + F K+ E
Sbjct: 844 VIFIISGCFGREMMVLVGCFLFLYTTLQVRFSYFYKISVDGTTSILTSKSTRVFLKKWFE 903
Query: 157 TLRPISTQIEELCFLTFQY--SDLSDAYYKLITFLLRFLTLSI 35
I I L L Q D K FL+ F TL +
Sbjct: 904 CSLLIICLIWTLVILASQMMEEDTFLCQNKFFAFLITFFTLMV 946
>U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical
protein B0244.4 protein.
Length = 309
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = -2
Query: 319 ISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPI 143
IS+L V++ + + T+++ + +SF+++L Y + T+RPI
Sbjct: 90 ISALTACVIMLALRILQLITSSFTIYFLFFLIDDLSFYSLLGSYVGSAILLYLATIRPI 148
>AF016445-2|AAC69064.1| 376|Caenorhabditis elegans Serpentine
receptor, class w protein134 protein.
Length = 376
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/101 (22%), Positives = 42/101 (41%)
Frame = -2
Query: 343 IMCLVIVIISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQ 164
I +V +I+ +H VL + + N +T Y F + S F + A + +SK
Sbjct: 43 IASVVCFLINIVHILVLTRKSMRTSCINITMTAVAIYDIFSFFSTFEVTAIEIISRYSKC 102
Query: 163 VETLRPISTQIEELCFLTFQYSDLSDAYYKLITFLLRFLTL 41
T+ ++ L +L QY+ + ++R L L
Sbjct: 103 FNTMSYHLVSVDLLLYLVNQYARRCSTWLLFSVAVIRTLVL 143
>AF125951-2|AAD14691.1| 643|Caenorhabditis elegans Hypothetical
protein D2063.2 protein.
Length = 643
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -2
Query: 304 CSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPISTQI 131
C +LI F NK+T Y Y+ S+FT L Y + + +E +RPI + I
Sbjct: 585 CGRKCELIDYLPLFFNKITNMYQYVDSRGFSYFTTL--YHLS--AHGIELVRPIYSAI 638
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,263,327
Number of Sequences: 27780
Number of extensions: 153539
Number of successful extensions: 505
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -